miRBase entry: cpo-mir-3959

Stem-loop cpo-mir-3959


Accession
MI0038870
Description
Cavia porcellus cpo-mir-3959 precursor miRNA


Sequence

GGUUGAUCAGAGAACAUACAUUuuaccagugaUGUAUGUCGACUGAUCCACAGU
.((.((((((.((.((((((((........))))))))))..)))))).))...

Structure
--G  U      -A  A        uua 
   GU GAUCAG  GA CAUACAUU   c
   || ||||||  || ||||||||    
   CA CUAGUC  CU GUAUGUag   c
UGA  C      AG  -        uga 


Annotation confidence Not enough data
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Genome context
DS562966.1: 1104334-1104387 [+]
Clustered miRNAs
17 other miRNAs are < 10 kb from cpo-mir-3959
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-3959-5p

Accession MIMAT0047441
Description Cavia porcellus cpo-miR-3959-5p mature miRNA
Sequence 1 - GGUUGAUCAGAGAACAUACAUU - 22
Evidence experimental
Illumina [1]

Mature cpo-miR-3959-3p

Accession MIMAT0047442
Description Cavia porcellus cpo-miR-3959-3p mature miRNA
Sequence 33 - UGUAUGUCGACUGAUCCACAGU - 54
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344