miRBase entry: dno-mir-542

Stem-loop dno-mir-542


Accession
MI0039151
Description
Dasypus novemcinctus dno-mir-542 precursor miRNA


Sequence

UCGGGGAUCAUCAUGUCACGAGauacccacugugcacuUGUGACAGAUUGAUAACUGAAA
((((..((((...(((((((((.(((.....)))..)))))))))...))))..))))..

Structure
--    GG    UCA         -a   c 
  UCGG  AUCA   UGUCACGAG  uac c
  ||||  ||||   |||||||||  ||| a
  AGUC  UAGU   ACAGUGUuc  gug c
AA    AA    UAG         ac   u 


Annotation confidence Not enough data
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Genome context
JH573198.1: 468016-468075 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from dno-mir-542
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dno-miR-542-5p

Accession MIMAT0047969
Description Dasypus novemcinctus dno-miR-542-5p mature miRNA
Sequence 1 - UCGGGGAUCAUCAUGUCACGAG - 22
Evidence experimental
Illumina [1]

Mature dno-miR-542-3p

Accession MIMAT0047970
Description Dasypus novemcinctus dno-miR-542-3p mature miRNA
Sequence 39 - UGUGACAGAUUGAUAACUGAAA - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344