miRBase entry: ocu-mir-19b-2

Stem-loop ocu-mir-19b-2


Accession
MI0039230
Description
Oryctolagus cuniculus ocu-mir-19b-2 precursor miRNA

Literature search
1 open access papers mention ocu-mir-19b-2
(1 sentences)

Sequence

AGUUUUGCAGGUUUGCAUUUCagcguauaccuguauacauggcUGUGCAAAUCCAUGCAAAACUGA
(((((((((((((((((...(((((((((....)))))...)))))))))).)).)))))))))..

Structure
--         -  -      UUU    ---     c 
  AGUUUUGCA GG UUUGCA   Cagc   guaua c
  ||||||||| || ||||||   ||||   |||||  
  UCAAAACGU CC AAACGU   GUcg   cauau u
AG         A  U      ---    gua     g 


Annotation confidence Not enough data
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Genome context
CM000811.1: 108518503-108518568 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from ocu-mir-19b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-19b-3p

Accession MIMAT0048118
Description Oryctolagus cuniculus ocu-miR-19b-3p mature miRNA
Sequence 44 - UGUGCAAAUCCAUGCAAAACUGA - 66
Evidence experimental
Illumina [1]

Mature ocu-miR-19b-2-5p

Accession MIMAT0048119
Description Oryctolagus cuniculus ocu-miR-19b-2-5p mature miRNA
Sequence 1 - AGUUUUGCAGGUUUGCAUUUC - 21
Evidence not_experimental

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344