miRBase entry: ocu-mir-20a

Stem-loop ocu-mir-20a


Accession
MI0039231
Description
Oryctolagus cuniculus ocu-mir-20a precursor miRNA


Sequence

UAAAGUGCUUAUAGUGCAGGUAGuguuuaguuaucuACUGCAUUAUGAGCACUUAAAGU
..(((((((((((((((((.(((...........)))))))))))))))))))).....

Structure
---UA                 G   uguu 
     AAGUGCUUAUAGUGCAG UAG    u
     ||||||||||||||||| |||    a
     UUCACGAGUAUUACGUC Auc    g
UGAAA                 -   uauu 


Annotation confidence Not enough data
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Genome context
CM000797.1: 93068174-93068232 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from ocu-mir-20a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-20a-5p

Accession MIMAT0048120
Description Oryctolagus cuniculus ocu-miR-20a-5p mature miRNA
Sequence 1 - UAAAGUGCUUAUAGUGCAGGUAG - 23
Evidence experimental
Illumina [1]

Mature ocu-miR-20a-3p

Accession MIMAT0048121
Description Oryctolagus cuniculus ocu-miR-20a-3p mature miRNA
Sequence 37 - ACUGCAUUAUGAGCACUUAAAGU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344