miRBase entry: ocu-mir-27b

Stem-loop ocu-mir-27b

Accession

MI0039241

Description

Oryctolagus cuniculus ocu-mir-27b precursor miRNA

Sequence

AGAGCUUAGCUGAUUGGUGAACAgugauugguuuccgccuugUUCACAGUGGCUAAGUUCUGC
(((((((((((.((((.(((((((.....(((....)))))))))))))))))))))))))..

Structure

--           G    G       ugauu   u 
  AGAGCUUAGCU AUUG UGAACAg     ggu u
  ||||||||||| |||| |||||||     |||  
  UCUUGAAUCGG UGAC ACUUguu     ccg c
CG           -    -       -----   c

Annotation confidence Not enough data

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Genome context

CM000790.1: 74102379-74102441 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ocu-mir-27b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ocu-miR-27b-5p

Accession	MIMAT0048139
Description	Oryctolagus cuniculus ocu-miR-27b-5p mature miRNA
Sequence	1 - AGAGCUUAGCUGAUUGGUGAACA - 23
Evidence	experimental Illumina [1]

Mature ocu-miR-27b-3p

Accession	MIMAT0048140
Description	Oryctolagus cuniculus ocu-miR-27b-3p mature miRNA
Sequence	43 - UUCACAGUGGCUAAGUUCUGC - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344