miRBase entry: ocu-mir-29b-1

Stem-loop ocu-mir-29b-1


Accession
MI0039244
Description
Oryctolagus cuniculus ocu-mir-29b-1 precursor miRNA

Literature search
3 open access papers mention ocu-mir-29b-1
(3 sentences)

Sequence

GCUGGUUUCAUAUGGUGGUUUAGAuuuaaauagugauugucUAGCACCAUUUGAAAUCAGUGUU
((((((((((.((((((..((((((.............)))))))))))).))))))))))...

Structure
---          U      GU      uuaaa 
   GCUGGUUUCA AUGGUG  UUAGAu     u
   |||||||||| ||||||  ||||||     a
   UGACUAAAGU UACCAC  GAUcug     g
UUG          U      --      uuagu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
CM000796.1: 9515809-9515872 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ocu-mir-29b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-29b-5p

Accession MIMAT0048145
Description Oryctolagus cuniculus ocu-miR-29b-5p mature miRNA
Sequence 1 - GCUGGUUUCAUAUGGUGGUUUAGA - 24
Evidence experimental
Illumina [1]

Mature ocu-miR-29b-3p

Accession MIMAT0048146
Description Oryctolagus cuniculus ocu-miR-29b-3p mature miRNA
Sequence 42 - UAGCACCAUUUGAAAUCAGUGUU - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344