miRBase entry: ocu-mir-29b-2

Stem-loop ocu-mir-29b-2


Accession
MI0039245
Description
Oryctolagus cuniculus ocu-mir-29b-2 precursor miRNA

Literature search
3 open access papers mention ocu-mir-29b-2
(3 sentences)

Sequence

CUGGUUUCACAUGGUGGCUUAGAuuuuuccaucuuuguaucUAGCACCAUUUGAAAUCAGUGUU
(((((((((.((((((.((.((((..............)))))))))))).)))))))))....

Structure
----         C      G  U    uuuucc 
    CUGGUUUCA AUGGUG CU AGAu      a
    ||||||||| |||||| || ||||       
    GACUAAAGU UACCAC GA Ucua      u
UUGU         U      -  -    uguuuc 


Annotation confidence Not enough data
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Genome context
CM000805.1: 64849792-64849855 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ocu-mir-29b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-29b-3p

Accession MIMAT0048146
Description Oryctolagus cuniculus ocu-miR-29b-3p mature miRNA
Sequence 42 - UAGCACCAUUUGAAAUCAGUGUU - 64
Evidence experimental
Illumina [1]

Mature ocu-miR-29b-2-5p

Accession MIMAT0048147
Description Oryctolagus cuniculus ocu-miR-29b-2-5p mature miRNA
Sequence 1 - CUGGUUUCACAUGGUGGCUUAGA - 23
Evidence not_experimental

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344