miRBase entry: ocu-mir-34b

Stem-loop ocu-mir-34b


Accession
MI0039257
Description
Oryctolagus cuniculus ocu-mir-34b precursor miRNA


Sequence

UAGGCAGUGUAAUUAGCUGAUUGUacuguggugcuuacAAUCACUAACUCCACUGCCAUC
..(((((((...((((.((((((((..((...)).))))))))))))...)))))))...

Structure
-UA       UAA    C        cu  g 
   GGCAGUG   UUAG UGAUUGUa  gu  
   |||||||   |||| ||||||||  || g
   CCGUCAC   AAUC ACUAAcau  cg  
CUA       CUC    -        -u  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
CM000790.1: 104894570-104894629 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ocu-mir-34b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-34b-5p

Accession MIMAT0048169
Description Oryctolagus cuniculus ocu-miR-34b-5p mature miRNA
Sequence 1 - UAGGCAGUGUAAUUAGCUGAUUGU - 24
Evidence experimental
Illumina [1]

Mature ocu-miR-34b-3p

Accession MIMAT0048170
Description Oryctolagus cuniculus ocu-miR-34b-3p mature miRNA
Sequence 39 - AAUCACUAACUCCACUGCCAUC - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344