miRBase entry: ocu-mir-96

Stem-loop ocu-mir-96


Accession
MI0039262
Description
Oryctolagus cuniculus ocu-mir-96 precursor miRNA


Sequence

UUUGGCACUAGCACAUUUUUGCUugugucucuccgcucugagCAAUCAUGUGCAGUGCCAAUAU
.((((((((.((((((..(((((((((......)))...))))))..))))))))))))))...

Structure
--U        A      UU      ---   uc 
   UUGGCACU GCACAU  UUGCUu   gug  u
   |||||||| ||||||  ||||||   |||   
   AACCGUGA CGUGUA  AACgag   cgc  c
UAU        -      CU      ucu   cu 


Annotation confidence Not enough data
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Genome context
CM000796.1: 14827059-14827122 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ocu-mir-96
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-96-5p

Accession MIMAT0048178
Description Oryctolagus cuniculus ocu-miR-96-5p mature miRNA
Sequence 1 - UUUGGCACUAGCACAUUUUUGCU - 23
Evidence experimental
Illumina [1]

Mature ocu-miR-96-3p

Accession MIMAT0048179
Description Oryctolagus cuniculus ocu-miR-96-3p mature miRNA
Sequence 43 - CAAUCAUGUGCAGUGCCAAUAU - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344