miRBase entry: ocu-mir-105a-1

Stem-loop ocu-mir-105a-1


Accession
MI0039270
Description
Oryctolagus cuniculus ocu-mir-105a-1 precursor miRNA


Sequence

UCAAAUGCUCAGACUCCUGUGGUGgcugcucaugcaCCACGGACGUUUGAGCAUGUGCU
.((.(((((((((((((.((((((..........))))))))).)))))))))).))..

Structure
-U  A          -   U      gcug 
  CA AUGCUCAGAC UCC GUGGUG    c
  || |||||||||| ||| ||||||     
  GU UACGAGUUUG AGG CACCac    u
UC  G          C   -      guac 


Annotation confidence Not enough data
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Genome context
GL018731.1: 390331-390389 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ocu-mir-105a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-105a-5p

Accession MIMAT0048192
Description Oryctolagus cuniculus ocu-miR-105a-5p mature miRNA
Sequence 1 - UCAAAUGCUCAGACUCCUGUGGUG - 24
Evidence experimental
Illumina [1]

Mature ocu-miR-105a-3p

Accession MIMAT0048193
Description Oryctolagus cuniculus ocu-miR-105a-3p mature miRNA
Sequence 37 - CCACGGACGUUUGAGCAUGUGCU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344