miRBase entry: ocu-mir-142

Stem-loop ocu-mir-142


Accession
MI0039300
Description
Oryctolagus cuniculus ocu-mir-142 precursor miRNA


Sequence

CAUAAAGUAGAAAGCACUACUaacagcacuggagggugUAGUGUUUCCUACUUUAUGGA
((((((((((.(((((((((...(..(....)..)..))))))))).))))))))))..

Structure
--          A         Uaa ag a 
  CAUAAAGUAG AAGCACUAC   c  c c
  |||||||||| |||||||||   |  |  
  GUAUUUCAUC UUUGUGAUg   g  g u
AG          C         -ug ga g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
CM000808.1: 29938908-29938966 [+]

Database links

Mature ocu-miR-142-5p

Accession MIMAT0048245
Description Oryctolagus cuniculus ocu-miR-142-5p mature miRNA
Sequence 1 - CAUAAAGUAGAAAGCACUACU - 21
Evidence experimental
Illumina [1]

Mature ocu-miR-142-3p

Accession MIMAT0048246
Description Oryctolagus cuniculus ocu-miR-142-3p mature miRNA
Sequence 39 - UAGUGUUUCCUACUUUAUGGA - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344