miRBase entry: ocu-mir-143

Stem-loop ocu-mir-143


Accession
MI0039301
Description
Oryctolagus cuniculus ocu-mir-143 precursor miRNA

Literature search
1 open access papers mention ocu-mir-143
(1 sentences)

Sequence

GGUGCAGUGCUGCAUCUCUGGucaguugggagucUGAGAUGAAGCACUGUAGCUC
(.(((((((((.((((((.((((......)).)).)))))).))))))))).)..

Structure
-- G         G      U  -  ag 
  G UGCAGUGCU CAUCUC GG uc  u
  | ||||||||| |||||| || ||   
  C AUGUCACGA GUAGAG cu ag  u
CU G         A      U  g  gg 


Annotation confidence Not enough data
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Genome context
CM000792.1: 31258615-31258669 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ocu-mir-143
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-143-5p

Accession MIMAT0048247
Description Oryctolagus cuniculus ocu-miR-143-5p mature miRNA
Sequence 1 - GGUGCAGUGCUGCAUCUCUGG - 21
Evidence experimental
Illumina [1]

Mature ocu-miR-143-3p

Accession MIMAT0048248
Description Oryctolagus cuniculus ocu-miR-143-3p mature miRNA
Sequence 35 - UGAGAUGAAGCACUGUAGCUC - 55
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344