miRBase entry: ocu-mir-200c

Stem-loop ocu-mir-200c


Accession
MI0039340
Description
Oryctolagus cuniculus ocu-mir-200c precursor miRNA

Literature search
1 open access papers mention ocu-mir-200c
(3 sentences)

Sequence

CGUCUUACCCAGCAGUGUUUGGgugcugguugggagucucUAAUACUGCCGGGUAAUGAUGGA
((((((((((.((((((((.(((.(((.......)))))).)))))))).)))))).))))..

Structure
--    -      A        U   u   gg 
  CGUC UUACCC GCAGUGUU GGg gcu  u
  |||| |||||| |||||||| ||| |||  u
  GUAG AAUGGG CGUCAUAA cuc uga  g
AG    U      C        U   -   gg 


Annotation confidence Not enough data
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Genome context
CM000797.1: 32966987-32967049 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ocu-mir-200c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-200c-5p

Accession MIMAT0048321
Description Oryctolagus cuniculus ocu-miR-200c-5p mature miRNA
Sequence 1 - CGUCUUACCCAGCAGUGUUUGG - 22
Evidence experimental
Illumina [1]

Mature ocu-miR-200c-3p

Accession MIMAT0048322
Description Oryctolagus cuniculus ocu-miR-200c-3p mature miRNA
Sequence 41 - UAAUACUGCCGGGUAAUGAUGGA - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344