miRBase entry: ocu-mir-449a

Stem-loop ocu-mir-449a

Accession

MI0039408

Description

Oryctolagus cuniculus ocu-mir-449a precursor miRNA

Sequence

UGGCAGUGUAUUGUUAGCUGGUugaauaugugugugauauCAGCUAACAUACAACUGCUAUC
(((((((((((.((((((((((...(((....)))...)))))))))))))).)))))))..

Structure

--       -    U          uga   u 
  UGGCAGU GUAU GUUAGCUGGU   aua g
  ||||||| |||| ||||||||||   |||  
  AUCGUCA CAUA CAAUCGACua   ugu u
CU       A    -          uag   g

Annotation confidence Not enough data

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Genome context

CM000800.1: 71142265-71142326 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ocu-mir-449a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ocu-miR-449a-5p

Accession	MIMAT0048453
Description	Oryctolagus cuniculus ocu-miR-449a-5p mature miRNA
Sequence	1 - UGGCAGUGUAUUGUUAGCUGGU - 22
Evidence	experimental Illumina [1]

Mature ocu-miR-449a-3p

Accession	MIMAT0048454
Description	Oryctolagus cuniculus ocu-miR-449a-3p mature miRNA
Sequence	41 - CAGCUAACAUACAACUGCUAUC - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344