miRBase entry: ocu-mir-487b

Stem-loop ocu-mir-487b


Accession
MI0039419
Description
Oryctolagus cuniculus ocu-mir-487b precursor miRNA


Sequence

GUGGUUAUCCCUGUCCUGUUCGuuuuauucaugucgAAUCGUACAGGGUCAUCCACUU
((((....((((((.(.(((((............))))).).))))))....))))..

Structure
--    UUAU      C U     uuuua 
  GUGG    CCCUGU C GUUCG     u
  ||||    |||||| | |||||      
  CACC    GGGACA G UAAgc     u
UU    UACU      U C     uguac 


Annotation confidence Not enough data
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Genome context
GL019048.1: 137030-137087 [+]
Clustered miRNAs
14 other miRNAs are < 10 kb from ocu-mir-487b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-487b-5p

Accession MIMAT0048473
Description Oryctolagus cuniculus ocu-miR-487b-5p mature miRNA
Sequence 1 - GUGGUUAUCCCUGUCCUGUUCG - 22
Evidence experimental
Illumina [1]

Mature ocu-miR-487b-3p

Accession MIMAT0048474
Description Oryctolagus cuniculus ocu-miR-487b-3p mature miRNA
Sequence 37 - AAUCGUACAGGGUCAUCCACUU - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344