miRBase entry: ocu-mir-501

Stem-loop ocu-mir-501


Accession
MI0039429
Description
Oryctolagus cuniculus ocu-mir-501 precursor miRNA


Sequence

AAUCCUUUGUCCCUGGGUGAGAAUGCuuucugaaugcAAUGCACCCGGGCAAGGAUUCC
(((((((.(.(((.(((((....(((.........)))...))))))))))))))))..

Structure
--       U U   U     AGAA   uuu 
  AAUCCUU G CCC GGGUG    UGC   c
  ||||||| | ||| |||||    |||   u
  UUAGGAA C GGG CCCAC    Acg   g
CC       - -   -     -GUA   uaa 


Annotation confidence Not enough data
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Genome context
CM000811.1: 34238810-34238868 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from ocu-mir-501
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-501-5p

Accession MIMAT0048493
Description Oryctolagus cuniculus ocu-miR-501-5p mature miRNA
Sequence 1 - AAUCCUUUGUCCCUGGGUGAGAAUGC - 26
Evidence experimental
Illumina [1]

Mature ocu-miR-501-3p

Accession MIMAT0048494
Description Oryctolagus cuniculus ocu-miR-501-3p mature miRNA
Sequence 38 - AAUGCACCCGGGCAAGGAUUCC - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344