miRBase entry: ocu-mir-545

Stem-loop ocu-mir-545

Accession

MI0039446

Description

Oryctolagus cuniculus ocu-mir-545 precursor miRNA

Sequence

CCUCAGUAAAUGUUUAUUGGAUGaauaaaugagugacucaUCAACAAACAUUUAUUGCGUGCC
.(.((((((((((((....(((((.............)))))...)))))))))))).)....

Structure

---C U            AUUG     auaaa 
    C CAGUAAAUGUUU    GAUGa     u
    | ||||||||||||    |||||     g
    G GUUAUUUACAAA    CUacu     a
CCGU C            -CAA     cagug

Annotation confidence Not enough data

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Genome context

GL018757.1: 1527803-1527865 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ocu-mir-545

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ocu-miR-545-5p

Accession	MIMAT0048527
Description	Oryctolagus cuniculus ocu-miR-545-5p mature miRNA
Sequence	1 - CCUCAGUAAAUGUUUAUUGGAUG - 23
Evidence	experimental Illumina [1]

Mature ocu-miR-545-3p

Accession	MIMAT0048528
Description	Oryctolagus cuniculus ocu-miR-545-3p mature miRNA
Sequence	41 - UCAACAAACAUUUAUUGCGUGCC - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344