miRBase entry: ocu-mir-653

Stem-loop ocu-mir-653


Accession
MI0039454
Description
Oryctolagus cuniculus ocu-mir-653 precursor miRNA


Sequence

UUGAAACAUCCUCUAUUGAAUUaggcuuucaaccaagUUCACUGGAGUUUGUUUCAAUA
((((((((..(((((.((((((.((.......)).)))))).)))))..))))))))..

Structure
--        UC     U      a  cu 
  UUGAAACA  CUCUA UGAAUU gg  u
  ||||||||  ||||| |||||| ||  u
  AACUUUGU  GAGGU ACUUga cc  c
AU        UU     C      a  aa 


Annotation confidence Not enough data
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Genome context
CM000799.1: 35346249-35346307 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ocu-mir-653
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-653-5p

Accession MIMAT0048543
Description Oryctolagus cuniculus ocu-miR-653-5p mature miRNA
Sequence 1 - UUGAAACAUCCUCUAUUGAAUU - 22
Evidence experimental
Illumina [1]

Mature ocu-miR-653-3p

Accession MIMAT0048544
Description Oryctolagus cuniculus ocu-miR-653-3p mature miRNA
Sequence 38 - UUCACUGGAGUUUGUUUCAAUA - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344