miRBase entry: ocu-mir-1197

Stem-loop ocu-mir-1197


Accession
MI0039474
Description
Oryctolagus cuniculus ocu-mir-1197 precursor miRNA


Sequence

CGGUUGACCAUGGUGUGUACGcuuuaucugugacgUAGGACACAUGGUCUACUUCU
.(((.(((((((.(((.(((((.........).))))..)))))))))).)))...

Structure
--C   U       G   -G    - uuu 
   GGU GACCAUG UGU  UACG c   a
   ||| ||||||| |||  |||| |   u
   UCA CUGGUAC ACA  AUgc g   c
UCU   U       -   GG    a ugu 


Annotation confidence Not enough data
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Genome context
GL019048.1: 124893-124948 [+]
Clustered miRNAs
12 other miRNAs are < 10 kb from ocu-mir-1197
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-1197-5p

Accession MIMAT0048583
Description Oryctolagus cuniculus ocu-miR-1197-5p mature miRNA
Sequence 1 - CGGUUGACCAUGGUGUGUACG - 21
Evidence experimental
Illumina [1]

Mature ocu-miR-1197-3p

Accession MIMAT0048584
Description Oryctolagus cuniculus ocu-miR-1197-3p mature miRNA
Sequence 36 - UAGGACACAUGGUCUACUUCU - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344