Stem-loop sequence dre-mir-212-2

Accession

MI0039509 (change log)

Description

Danio rerio miR-212-2 stem-loop

Stem-loop

   -     a     -  a  u     c       c      cuua  gag 
5'  ucaga cuuca ug cc uggcu uagacug uuacug    ug   u
    ||||| ||||| || || ||||| ||||||| ||||||    ||    
3'  ggucu gaagu au gg acuga aucugac aaugac    ac   c
   c     -     c  c  u     c       -      -aug  agc 

Deep sequencing

278 reads, 0 reads per million, 10 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr10: 35644706-35644798 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-212-2

• dre-mir-212-2: chr10: 35644706-35644798 [+]
• dre-mir-132-2: chr10: 35645017-35645135 [+]
• dre-mir-2184: chr10: 35654245-35654354 [-]

Database links

• miRBase Tracker:MI0039509

Mature sequence dre-miR-212-5p

• Accession: MIMAT0048650
• Sequence: 14 - accuuggcucuagacugcuuacu - 36
• Deep sequencing: 239 reads, 9 experiments
• Evidence: not experimental

Mature sequence dre-miR-212-3p

• Accession: MIMAT0048651
• Sequence: 60 - uaacagucuacagucauggcuac - 82
• Deep sequencing: 37 reads, 10 experiments
• Evidence: not experimental

References

1. PMID:26473382 "A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome" Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ Annu Rev Genet. 49:213-242(2015).