Stem-loop sequence dre-mir-181d

Accession

MI0039515 (change log)

Description

Danio rerio miR-181d stem-loop

Literature search

9 open access papers mention dre-mir-181d
(18 sentences)

Stem-loop

   ua g      auaua         au    u      --   c 
5'   c gcugca     cauucauug  gucg uggguu  uca a
     | ||||||     |||||||||  |||| ||||||  |||  
3'   g ugacgu     gugaguaac  cagu acucag  agu u
   ag a      caaac         --    c      cg   g 

Deep sequencing

348 reads, 0 reads per million, 8 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr21: 8221660-8221743 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-181d

• dre-mir-181a-4: chr21: 8221805-8221888 [-]
• dre-mir-181d: chr21: 8221660-8221743 [-]

Database links

• miRBase Tracker:MI0039515

Mature sequence dre-miR-181d-5p

• Accession: MIMAT0048657
• Sequence: 14 - uacauucauugaugucguuggguu - 37
• Deep sequencing: 348 reads, 11 experiments
• Evidence: not experimental

Mature sequence dre-miR-181d-3p

• Accession: MIMAT0048658
• Sequence: 52 - cucacugaccaaugagugcaaa - 73
• Evidence: not experimental

References

1. PMID:26473382 "A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome" Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ Annu Rev Genet. 49:213-242(2015).