miRBase entry: dre-mir-23b-2

Stem-loop dre-mir-23b-2


Accession
MI0039517
Description
Danio rerio dre-mir-23b-2 precursor miRNA

Literature search
5 open access papers mention dre-mir-23b-2
(7 sentences)

Sequence

6619 reads, 867 reads per million, 11 experiments
cugcuggcuguguGGGUUCCUGGCGUGCUGAUUUgugacuuaagauaaaaAUCACAUUGCCAGGGAUUACCACacaaccgccac
....(((((((((((((((((((((((.((((((..............)))))))).))))))))))..)))))))...)))).

Structure
cugc    ---       --          -  C      gugacu 
    uggc   uguguGG  GUUCCUGGCG UG UGAUUU      u
    ||||   |||||||  |||||||||| || ||||||       
    accg   acaCACC  UAGGGACCGU AC ACUAaa      a
---c    cca       AU          U  -      aauaga 


Annotation confidence High
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Genome context
chr8: 30167625-30167708 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from dre-mir-23b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-23b-5p

Accession MIMAT0048660
Description Danio rerio dre-miR-23b-5p mature miRNA
Sequence 14 - GGGUUCCUGGCGUGCUGAUUU - 34
Evidence not_experimental

Mature dre-miR-23b-3p

Accession MIMAT0048661
Description Danio rerio dre-miR-23b-3p mature miRNA
Sequence 51 - AUCACAUUGCCAGGGAUUACCAC - 73
Evidence not_experimental

References

  1. PubMed ID: 26473382
    A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome
    "Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ"
    "Annu Rev Genet (2015) 49:213-242