Stem-loop sequence dre-mir-29b3

Accession

MI0039521 (change log)

Description

Danio rerio miR-29b3 stem-loop

Literature search

8 open access papers mention dre-mir-29b3
(80 sentences)

Stem-loop

   --a                  uu    gug uga 
5'    gcugguuucaaguggugu  uaga   c   u
      ||||||||||||||||||  ||||   |   c
3'    ugacuaaaguuuaccacg  aucu   g   a
   uug                  --    -aa uaa 

Deep sequencing

1170 reads, 63.6 reads per million, 11 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr23: 32440125-32440190 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0039521

Mature sequence dre-miR-29b3-5p

• Accession: MIMAT0048667
• Sequence: 2 - gcugguuucaagugguguuuuaga - 25
• Deep sequencing: 70 reads, 8 experiments
• Evidence: not experimental

Mature sequence dre-miR-29b3-3p

• Accession: MIMAT0048668
• Sequence: 44 - uagcaccauuugaaaucaguguu - 66
• Deep sequencing: 1062 reads, 11 experiments
• Evidence: not experimental

References

1. PMID:26473382 "A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome" Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ Annu Rev Genet. 49:213-242(2015).