Stem-loop sequence dre-mir-338-3

Accession

MI0039524 (change log)

Description

Danio rerio miR-338-3 stem-loop

Literature search

4 open access papers mention dre-mir-338-3
(14 sentences)

Stem-loop

   ggug              u   -         ccu    a auc 
5'     ucuccuggcaacaa auc cuggugcug   gagu c   u
       |||||||||||||| ||| |||||||||   |||| |    
3'     agggggccguuguu uag gacuacgac   cuca g   c
   caaa              u   u         ---    - aca 

Deep sequencing

8738 reads, 455 reads per million, 11 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr3: 51907478-51907562 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0039524

Mature sequence dre-miR-338-5p

• Accession: MIMAT0048672
• Sequence: 14 - aacaauauccuggugcugccugagu - 38
• Deep sequencing: 35 reads, 7 experiments
• Evidence: not experimental

Mature sequence dre-miR-338-3p

• Accession: MIMAT0048673
• Sequence: 52 - uccagcaucagugauuuuguugc - 74
• Deep sequencing: 5635 reads, 11 experiments
• Evidence: not experimental

References

1. PMID:26473382 "A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome" Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ Annu Rev Genet. 49:213-242(2015).