miRBase entry: csi-MIR169i

Stem-loop csi-MIR169i


Accession
MI0039644
Description
Citrus sinensis csi-MIR169i precursor miRNA

Literature search
5 open access papers mention csi-MIR169i
(13 sentences)

Sequence

ucuaguuuggUAGCCAAGGAUGACUUGCCUgauucuuccaauuaagcgguuucagauuaaucauauugauuaauuaguuuuuuaaaugaagccauugauggguuaccaggcagucaccuuggcuaacuugacagucucuugucucucaugcuaggc
.(((((.((((((((((((.(((((.(((((.....((((.((((..((((((((((((((((...)))))))))...........))))))).))))))))....)))))))))))))))))))....(((((....)))))..))).)))))..

Structure
-u     u   --------------------         A     U     auucu    a    gc       -----------         u 
  cuagu ugg                    UAGCCAAGG UGACU GCCUg     ucca uuaa  gguuuca           gauuaauca  
  ||||| |||                    ||||||||| ||||| |||||     |||| ||||  |||||||           ||||||||| a
  gaucg acu                    aucgguucc acuga cggac     gggu aguu  ccgaagu           uuaauuagu  
cg     u   cucuguucucugacaguuca         -     -     -cauu    -    -a       aaauuuuuuga         u 


Annotation confidence Not enough data
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Genome context
chr2: 11046938-11047093 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from csi-MIR169i
Name Accession Chromosome Start End Strand Confidence




Database links

Mature csi-miR169i-5p

Accession MIMAT0048898
Description Citrus sinensis csi-miR169i-5p mature miRNA
Sequence 11 - UAGCCAAGGAUGACUUGCCU - 30
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113