miRBase entry: csi-MIR169o

Stem-loop csi-MIR169o


Accession
MI0039705
Description
Citrus sinensis csi-MIR169o precursor miRNA

Literature search
5 open access papers mention csi-MIR169o
(12 sentences)

Sequence

gugCAGCCAAGGAUGACUUGCCGGcggccggaacuagcaaaggcaauucaagugcccuuauuuuccggcaaguuuauccuuggcuacauugggcuc
(((.((((((((((((((((((((.((((.(((...((....))..)))..).)))........)))))))).)))))))))))).))).......

Structure
-------   C            -        -------c   - -g   cua  a 
       gug AGCCAAGGAUGA CUUGCCGG        ggc c  gaa   gc a
       ||| |||||||||||| ||||||||        ||| |  |||   ||  
       uac ucgguuccuauu gaacggcc        ccg g  cuu   cg a
cucgggu   a            u        uuuuauuc   u aa   -aa  g 


Annotation confidence Not enough data
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Genome context
chr7: 4557214-4557309 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from csi-MIR169o
Name Accession Chromosome Start End Strand Confidence




Database links

Mature csi-miR169o-5p

Accession MIMAT0048995
Description Citrus sinensis csi-miR169o-5p mature miRNA
Sequence 4 - CAGCCAAGGAUGACUUGCCGG - 24
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113