Stem-loop sequence gga-mir-2184a

Accession

MI0040691 (change log)

Description

Gallus gallus miR-2184a stem-loop

Stem-loop

   --aa     a     g      -   ga 
5'     cagua gaguu augugc ggc  a
       ||||| ||||| |||||| |||  c
3'     gucau cucga uguacg ccg  g
   cgcc     c     g      u   ac 

Deep sequencing

82943 reads, 760 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr19: 5515026-5515081 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-2184a

• gga-mir-2184b: chr19: 5515022-5515080 [-]
• gga-mir-2184a: chr19: 5515026-5515081 [+]
• gga-mir-132a: chr19: 5515203-5515261 [-]
• gga-mir-132b: chr19: 5515205-5515263 [+]
• gga-mir-212: chr19: 5515770-5515834 [-]
• gga-mir-132c: chr19: 5515771-5515836 [+]

Database links

• miRBase Tracker:MI0040691

Mature sequence gga-miR-2184a-5p

• Accession: MIMAT0049948
• Sequence: 1 - aacaguaagaguugaugugcgg - 22
• Deep sequencing: 82835 reads, 5 experiments
• Evidence: experimental; Illumina [1]

Mature sequence gga-miR-2184a-3p

• Accession: MIMAT0049949
• Sequence: 35 - gcaugugagcuccuacugccgc - 56
• Deep sequencing: 108 reads, 5 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:29079676 "Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation" Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H Genome Res. [Epub prior to print](2017).