miRBase entry: gga-mir-12242

Stem-loop gga-mir-12242


Accession
MI0040704
Description
Gallus gallus gga-mir-12242 precursor miRNA


Sequence

GCCGAGGGGGGGUUGCGGCGCAGUucucccggcucugcUGCCCGCAGCACCGCUUCUCGCU
((.(((((((((((((((.(((((............)))))))))))).)).)))))))).

Structure
-  C      -  -       C     ucucc 
 GC GAGGGG GG GUUGCGG GCAGU     c
 || |||||| || ||||||| |||||      
 CG CUCUUC CC CGACGCC CGUcg     g
U  -      G  A       -     ucucg 


Annotation confidence Not enough data
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Genome context
chr20: 8883519-8883579 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-12242
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-12242-5p

Accession MIMAT0049972
Description Gallus gallus gga-miR-12242-5p mature miRNA
Sequence 1 - GCCGAGGGGGGGUUGCGGCGCAGU - 24
Evidence experimental
Illumina [1]

Mature gga-miR-12242-3p

Accession MIMAT0049973
Description Gallus gallus gga-miR-12242-3p mature miRNA
Sequence 39 - UGCCCGCAGCACCGCUUCUCGCU - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29079676
    Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
    "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
    Genome Res (2017) 12:1961-1973