miRBase entry: mdo-mir-12305

Stem-loop mdo-mir-12305


Accession
MI0040795
Description
Monodelphis domestica mdo-mir-12305 precursor miRNA


Sequence

108 reads, 4 reads per million, 2 experiments
gCAGGUCUGGUGCCCCGGGUUGCACUugaguuuaaaagaucagUGCACCCCGAGUACCGCUGUUC
((((...((((((..((((.((((((.((..........)))))))).)))).))))))))))..

Structure
--    GUC      CC    U      u  guuu 
  gCAG   UGGUGC  CGGG UGCACU ga    a
  ||||   ||||||  |||| |||||| ||     
  UGUC   GCCAUG  GCCC ACGUga cu    a
CU    ---      -A    C      -  agaa 


Annotation confidence Not enough data
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Genome context
chr1: 432129485-432129549 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from mdo-mir-12305
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-12305-5p

Accession MIMAT0050122
Description Monodelphis domestica mdo-miR-12305-5p mature miRNA
Sequence 2 - CAGGUCUGGUGCCCCGGGUUGCACU - 26
Evidence experimental
Illumina [1]

Mature mdo-miR-12305-3p

Accession MIMAT0050123
Description Monodelphis domestica mdo-miR-12305-3p mature miRNA
Sequence 44 - UGCACCCCGAGUACCGCUGUUC - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29079676
    Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
    "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
    Genome Res (2017) 12:1961-1973