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3 publications mentioning dre-mir-735

Open access articles that are associated with the species Danio rerio and mention the gene name mir-735. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

1
[+] score: 33
In general, dre-miR-301b, -142a, -144, and rno-miR-33, were highly focused in network of downregulated miRNAs, while dre-miR-735 and mmu-miR-6240 were in network of upregulated miRNAs. [score:7]
Totally, the final results included 9 downregulated miRNAs (dre-miR-142a-3p, dre-miR-142b-5p, dre-miR-144-3p, dre-miR-146a, dre-miR-190a, dre-miR-219-5p, dre-miR-301b-3p, dre-miR-459-5p and rno-miR-33-5p) and 3 upregulated miRNAs (dre-miR-735-3p, dre-miR-735-5p and mmu-miR-6240). [score:7]
Significant expression changes of miR-735 were also found in ethanol- and PFOS-exposed zebrafish larvae [22, 23], reflecting this expression change was somehow universal. [score:5]
The existed information about mmu-miR-6240 was still inadequate, and it was estimated to exert functions in zebrafish neural and skeletal development based on our analysis, however its expression amounts were far less than miR-735. [score:4]
In upregulated miRNAs, non-conservative Dicer-independent miR-735 was especially worth noting, which mostly accumulated in central nervous system although its distribution was known throughout the whole body of zebrafish [21]. [score:4]
To validate the deep sequencing data, we used RT-PCR to assay the expression levels of five selected zebrafish miRNAs: miR-735-3p, -301b-3p, -142b-5p, -459-5p and putative zebrafish miR-33-5p. [score:2]
By means of our analysis strategy, miR-735 was proposed to be main contributor participating in BDE47 -induced effects of larval neural and sensory development. [score:2]
Through the combination of these approaches, our study found BDE47 altered miRNA profiling of zebrafish larvae in response to transcriptomic changes, proposed several miRNAs including miR-735 and -301b relevant to BDE47 -induced effects, and also identified two novel miRNAs which may exert their key functions. [score:1]
The functions of miR-735 could not be interpreted previously due to the lack of information. [score:1]
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2
[+] score: 26
Other miRNAs from this paper: dre-mir-26a-2, dre-mir-726, dre-mir-727
Genome Variation Type Editing degree in different treatment miRNA binding in editing sites Gene name Expression Change ≥1.5 fold change Chr Position Control Genta Neo Before editing After editing chr12 5897334 A->G 58.3% 79.4% 100.0% N/A dre-miR-726: G|C plekhm1 Down-regulated chr21 2596180 G->A 54.3% 14.3% 26.0% dre-miR-735-3p: G|C dre-miR-26a-2-3p: A|U si:ch211-241b2.1 Up-regulated chr6 59149763 A->G 5.8% 25.5% 40.5% N/A dre-miR-727-5p: G|C shmt2 Down-regulated RNA editing is an essential gene regulatory mechanism and is quite prevalent throughout the transcriptome. [score:13]
Genome Variation Type Editing degree in different treatment miRNA binding in editing sites Gene name Expression Change ≥1.5 fold change Chr Position Control Genta Neo Before editing After editing chr12 5897334 A->G 58.3% 79.4% 100.0% N/A dre-miR-726: G|C plekhm1 Down-regulated chr21 2596180 G->A 54.3% 14.3% 26.0% dre-miR-735-3p: G|C dre-miR-26a-2-3p: A|U si:ch211-241b2.1 Up-regulated chr6 59149763 A->G 5.8% 25.5% 40.5% N/A dre-miR-727-5p: G|C shmt2 Down-regulated To establish a mo del of AG -induced ototoxicity, embryonic zebrafish were incubated in medium containing various concentrations of AG from the beginning of zebrafish ear development at the 50% epiboly/shield stage to 2 dpf, when the statoacoustic (VIIIth) ganglion becomes a separate section (Haddon and Lewis, 1996; Whitfield et al., 2002). [score:13]
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3
[+] score: 1
Other miRNAs from this paper: hsa-let-7a-1, hsa-let-7a-2, hsa-let-7a-3, hsa-let-7b, hsa-let-7e, hsa-mir-20a, hsa-mir-21, hsa-mir-23a, hsa-mir-24-1, hsa-mir-24-2, hsa-mir-26b, hsa-mir-27a, hsa-mir-29a, hsa-mir-31, hsa-mir-29b-1, hsa-mir-29b-2, hsa-mir-103a-2, hsa-mir-103a-1, hsa-mir-199a-1, hsa-mir-148a, hsa-mir-7-1, hsa-mir-7-2, hsa-mir-7-3, hsa-mir-10b, hsa-mir-181a-2, hsa-mir-181b-1, hsa-mir-181c, hsa-mir-199a-2, hsa-mir-199b, hsa-mir-203a, hsa-mir-204, hsa-mir-212, hsa-mir-181a-1, hsa-mir-221, hsa-mir-23b, hsa-mir-27b, hsa-mir-128-1, hsa-mir-132, hsa-mir-133a-1, hsa-mir-133a-2, hsa-mir-143, hsa-mir-200c, hsa-mir-181b-2, hsa-mir-128-2, hsa-mir-200a, hsa-mir-30e, hsa-mir-148b, hsa-mir-338, hsa-mir-133b, dre-mir-7b, dre-mir-7a-1, dre-mir-7a-2, dre-mir-10b-1, dre-mir-181b-1, dre-mir-181b-2, dre-mir-199-1, dre-mir-199-2, dre-mir-199-3, dre-mir-203a, dre-mir-204-1, dre-mir-181a-1, dre-mir-221, dre-mir-222a, dre-let-7a-1, dre-let-7a-2, dre-let-7a-3, dre-let-7a-4, dre-let-7a-5, dre-let-7a-6, dre-let-7b, dre-let-7e, dre-mir-7a-3, dre-mir-10b-2, dre-mir-20a, dre-mir-21-1, dre-mir-21-2, dre-mir-23a-1, dre-mir-23a-2, dre-mir-23a-3, dre-mir-23b, dre-mir-24-4, dre-mir-24-2, dre-mir-24-3, dre-mir-24-1, dre-mir-26b, dre-mir-27a, dre-mir-27b, dre-mir-29b-1, dre-mir-29b-2, dre-mir-29a, dre-mir-30e-2, dre-mir-101b, dre-mir-103, dre-mir-128-1, dre-mir-128-2, dre-mir-132-1, dre-mir-132-2, dre-mir-133a-2, dre-mir-133a-1, dre-mir-133b, dre-mir-133c, dre-mir-143, dre-mir-148, dre-mir-181c, dre-mir-200a, dre-mir-200c, dre-mir-203b, dre-mir-204-2, dre-mir-338-1, dre-mir-338-2, dre-mir-454b, hsa-mir-181d, dre-mir-212, dre-mir-181a-2, hsa-mir-551a, hsa-mir-551b, dre-mir-31, dre-mir-722, dre-mir-724, dre-mir-725, dre-mir-740, hsa-mir-103b-1, hsa-mir-103b-2, dre-mir-2184, hsa-mir-203b, dre-mir-7146, dre-mir-181a-4, dre-mir-181a-3, dre-mir-181a-5, dre-mir-181b-3, dre-mir-181d, dre-mir-204-3, dre-mir-24b, dre-mir-7133, dre-mir-128-3, dre-mir-7132, dre-mir-338-3
Four miRNAs in miRBase, miR-722, miR-735 and miR-740 and miR-7146, were excluded from the analysis as their mapped genomic locations conflicted with miRBase annotation. [score:1]
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