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28 publications mentioning tae-MIR167a

Open access articles that are associated with the species Triticum aestivum and mention the gene name MIR167a. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

1
[+] score: 74
Recently, studies reported that miR171 and miR167 showed diurnal oscillation expression during the day: up-regulated in the light and down-regulated in darkness (Siré et al., 2009). [score:9]
The most frequent term for “biological process” was “regulation of transcription” [such as the targets of tae-miR1120c-5p (Traes_4BS_35F8C45F6), tae-miR1130b-3p (Traes_2AL_EE1350B36) and tae-miR164 (Traes_2BL_6AEE8AC28)] followed by “transporter” and “auxin-activated signaling pathway” [such as the targets of tae-miR167a (Traes_2AL_A7941CB12)] in three comparison groups (FS1/SS1, FS2/SS2 and FS3/SS3) of targets for known miRNAs (Figure 4 and Table S6). [score:8]
In addition, the terms “regulation of flower development” [such as the targets of tae-miR167a (Traes_2DL_8434C0251), tae-miR1130b-3p (Traes_2DL_DA1A74C0D) and tae-miR156 (Traes_2BS_186EA570A)] and “recognition of pollen” [such as the targets of tae-miR1122b-3p (Traes_1DS_7868656E4.1) and tae-miR5049-3p (Traes_2AL_2A541092D. [score:7]
miR172, miR156, and miR171 interact with their respective target genes (AP2, SPL, and SCL), participating in the GA/abscisic acid (ABA) signaling pathway and GA/auxin signaling pathway to regulate flowering time; miR825, miR167, and miR1120/miR1130 interact with their respective target genes (CaBP, ARF, and LRR), participating in the CRY/PHY signaling pathway, auxin signaling pathway and JA signaling pathway, to modulate pollen development. [score:7]
Another study showed that blue light alters miR167 expression and microRNA -targeted auxin response factor genes in Arabidopsis thaliana suggesting that miR171 and miR167 may be regulated by light or the circadian clock. [score:6]
In this study, tae-miR171a and tae-miR167a show differential expression between FS and SS at different developmental stages (Table 4), as well as their targets (Traes_6DL_26DDCA106.1 for tae-miR171a; Traes_2AL_A7941CB12.2 and Traes_2BL_B2D711406.2 for tae-miR167a) (Table S5). [score:6]
Mutation of auxin response factor genes ARF6 and ARF8 (targets of miR167) could cause flower organ developmental defects (Nagpal et al., 2005; Peng et al., 2006). [score:5]
However, many differentially expressed miRNAs such as tae-miR167a, tae-miR156 and tae-miR164, showed differentially expressed miRNAs peaked at stage 3 (Figure 2), suggesting that the transition of male fertility may occur at this time. [score:5]
There are many studies demonstrating that miR167 with its targets plays a crucial role in floral organ development. [score:4]
These predicted targets of known miRNAs, such as miR156, miR159, miR164, miR1120, and miR167, are described as growth -regulating factors, MYB family transcription factors, F-box domain-containing proteins, MADS-box family proteins, and SBP-box gene family members (Table S5). [score:4]
Overexpression of miR167 leads to Arabidopsis male sterility (Siré et al., 2009). [score:3]
Moreover, overexpression of miRNA167 can lead to male fertility defects (Siré et al., 2009). [score:3]
Moreover, miR167 is regulated by both light and temperature. [score:2]
Plant fertility defects induced by the enhanced expression of microrna167. [score:2]
Tang Z. et al. (2012) found that miR167 and transacting small interfering RNA (tasiRNA)-ARF played roles in cold -induced male sterility in wheat (Tang Z. et al., 2012). [score:1]
Diurnal oscillation in the accumulation of Arabidopsis microRNAs, miR167, miR168, miR171 and miR398. [score:1]
For example, tae-miR167, tae-miR5048, tae-miR5062, tae-miR9666, and tae-miR9672 were found over 10,000 times (Table 4). [score:1]
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2
[+] score: 43
In their study, they found that the expression of miR164, miR395, and miR156 was downregulated while miR159, miR167, and miR171 expression was upregulated in leaf tissues of wheat. [score:11]
In addition, miR167, which targets one of the regulators of the stress-responsive pathway, auxin responsive factor (ARF), is upregulated in both heat and cold stresses. [score:7]
Wang and collogues identified induced expression of miR159 and miR399 upon wounding while miR164, miR167, miR393, and miR398 were detected as downregulated by the same process. [score:6]
The targeting of several Auxin response factors by miR167 and miR160, HD-ZIP transcription factors by miR166, NAC family transcription factors by miR164, and MYB family transcription factors by miR159 in soybean (Song et al. 2011) and the miR824 targeting of MADS box genes were recently shown to be involved in drought stress responses in Brachypodium and rice, and all provide examples of how this mechanism can mediate responses to numerous abiotic stresses (Arora et al. 2007; Kutter et al. 2007; Wei et al. 2014a). [score:5]
Common miRNA families that are differentially expressed in pollen, endosperm, and leaf tissues of treated parents and non -treated progenies included bra-miR167, bra-miR390, and bra-miR168. [score:3]
However, several studies revealed altered expression of numerous miRNAs such as miR159, miR164, miR167, miR172, miR319, and miR398 in response to both heat and cold stresses (Tang et al. 2012; Gupta et al. 2014; Wang et al. 2014) (Fig.   4). [score:3]
Differential expression of miR159, miR167, miR1122, miR1125, miR1135, mir1136, miR1139, and miR408 was also observed under Pi deprivation in wheat (Zhao et al. 2013). [score:3]
Interestingly, some miRNA families, for example miR159, miR167, and miR169, were detected as responsive to multiple stresses (Budak et al. 2014; Sinha et al. 2015; Budak et al. 2015c). [score:1]
miR167, miR319, miR398, miR172, miR164, miR159, and miR169 are responsive to both heat and cold stresses Heat and cold stress result in distinct and independent modifications to cellular processes. [score:1]
Among these, miR159, miR167, and miR408 have orthologues from several dicot plants. [score:1]
miR167, miR319, miR398, miR172, miR164, miR159, and miR169 are responsive to both heat and cold stresses Heat and cold stress result in distinct and independent modifications to cellular processes. [score:1]
dicocoides, T. aestivum, H. vulgare Homeodomain leucine zipper (HD-Zip) transcription factorKantar et al. 2011a, Hackenberg et al. 2014, Kantar et al. 2010, Ma et al. 2015 miR167 Ae. [score:1]
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3
[+] score: 35
Upon drought, however, miR167 was downregulated in T. aestivum (fourfold) but upregulated in A. tauschii (26 fold), likely resulting in a significant difference in miR167 accumulation in these two species. [score:7]
Upon drought, miR167 was downregulated in T. aestivum, however, its expression was remarkably stimulated in A. tauschii (Figure 5). [score:6]
The expressions of miR167, miR5175, and miR5205 were observed in both species, while miR5523 was expressed only in A. tauschii. [score:5]
Four miRNAs (miR167, miR5175, miR5205, miR5523) were selected for quantification of expression in response to drought stress, the most prevalent stress condition causing severe yield losses worldwide. [score:3]
FIGURE 5Expression levels of miR167, miR5175, and miR5205 in A. tauschii and T. aestivum seedlings in response to drought stress. [score:3]
Under normal conditions, miR167 expression was 18 fold higher in T. aestivum than A. tauschii. [score:3]
Under control conditions, miR167 expression appeared to be relatively high in T. aestivum, similar to previous observations that syntetic hexaploids (T. turgidum durum × A. tauschii) had higher miR167 levels, compared to the diploids (Kenan-Eichler et al., 2011). [score:2]
In order to experimentally verify selected miRNAs, miR167, miR5175, miR5205 and miR5523, and quantify their expression levels in response to 4 h shock drought stress qRT-PCR using FastStart Universal SYBR Green Master (ROX; Mannheim, Germany) was performed with the following reaction mixture: 20 μl reaction included 3 μl RT stem–loop cDNA products, 10 μl 2× Master mix, 0.6 μl primers (300 nM each) and 6.4 μl nuclease-free water. [score:2]
The annealing temperatures were optimized to 56°C for miR5523 and 58°C for miR167, miR5175, and miR5205. [score:1]
Of the four selected miRNAs, miR167 is conserved among plants, including A. tauschii and wheat, and has been implicated in abiotic and biotic stress responses (Yao et al., 2007; Wei et al., 2009; Xin et al., 2010; Kenan-Eichler et al., 2011; Gupta et al., 2012; Tang et al., 2012; Jia et al., 2013; Li et al., 2013; Khaksefidi et al., 2015). [score:1]
Two miRNA families, miR167 and miR2118 appeared to gain repetitive stem–loops in bread wheat. [score:1]
In contrast, miR167, with the highest number of non-repetitive hairpins, did not have any repetitive hairpins and constituted only 1.60% of the overall representation. [score:1]
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4
[+] score: 29
As shown in S3 Fig., except AK249930, there is not obvious different for the expression levels of the predicated targets in F [1] compared to its parents, indicating that the expression levels of miR159, miR167, miR5072 and their predicated respective targets did not show an obvious negative correlation. [score:8]
The expression levels of miR159, miR165/166, miR167 and miR5072. [score:3]
Moreover, 7 predicated targets (AK248335 and AK249930 for miR165/166, AJ748348_1 and AK248211 for miR159, AK248413 and RFL_Contig2908 for miR167, AK253010 for miR5072) were chosen randomly in TriFLDB (S2 Table) and validated using qRT-PCR (S3 Fig. ). [score:3]
Overexpressing miR167 mimicked the double mutant arf6arf8 phenotypes, such as short hypocotyls, short internode, reduced stem elongation, plant height dwarf [64]. [score:3]
In our study, the same phenotypes and the high increase of miR167 expression were observed in wheat F [1] hybrids (S2 Table, Fig. 4), indicating that miR167 maybe play important role in wheat hybrid necrosis. [score:3]
In this study, 5 miRNAs (tae-miR159, tae-miR165/166, tae-miR167 and tae-miR5072) and 7 predicated targets (AK248335, AK249930, AJ748348_1, AK248211, AK248413, RFL_Contig2908, and AK253010) were validated. [score:3]
Especially, the markedly increase of expressions of miR165/miR166, miR159 and miR167 were the major cause of hybrid necrosis. [score:3]
In addition, Yang et al. [63] and Wu et al. [64] reported that miR167 controlled patterns of the auxin responsive factor 6 (ARF6) and auxin responsive factor 8 (ARF8), and regulated both female and male reproduction in Arabidopsis and rice. [score:2]
The most interesting and striking miRNAs with high changes during hybrid necrosis were miR165, miR166, miR159 and miR167 (S2 Table). [score:1]
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5
[+] score: 27
The conserved miRNA-target interaction previously proved to be essential for floral development in plant, like tae-miR156-SPL17, tae-miR159a-GAMYB, tae-miR160-ARF18, tae-miR164-CUC2 and tae-miR167a-ARF12, showed very little changes in expression between SL and NN plants at MMC and MP stages (Additional file  19: Figure S7). [score:6]
The relative expression of selected targets from degradome data for miR156 (SPL17), miR159 (GAMYB), miR160 (ARF18), miR164 (CUC2), miR167 (ARF12) and miR1127b (DAD1). [score:5]
c and d Screening of significant differentially expressed genes with Volcano chart by comparing SL1 and NN1, SL2 and NN2 There are several conserved miRNAs that have been reported to be essential for reproductive development in plants, including miR156/7, miR159, miR160, miR164, miR165/166, miR167, miR169, miR172, miR319 and miR396 [14]. [score:4]
No obvious expression changes of tae-miR159a, tae-miR160, tae-miR164, tae-miR167a and tae-miR167c were found between SL1 and NN1, and between SL2 and NN2 samples. [score:3]
miR167 and tasiRNA-ARF play roles in regulating the auxin-signaling pathway and possibly in response to cold stress, which linked with male sterility in the BS366, a thermo-sensitive genic male sterile (TGMS) lines of wheat, during early phase of anther development [18]. [score:3]
According to previous studies, miR156, miR159, miR160, miR164, miR167, miR319, miR396 and miR5200 were mainly involved in floral development [14, 28]. [score:2]
Error bars indicated s. d. based on three biological replicates (** P < 0.01, Student’s t-test) There are several conserved miRNAs that have been reported to be essential for reproductive development in plants, including miR156/7, miR159, miR160, miR164, miR165/166, miR167, miR169, miR172, miR319 and miR396 [14]. [score:2]
In this study, miR156, miR159, miR160, miR164, miR167, miR319 and miR396 were identified from our data. [score:1]
Some conserved and classical miRNAs such as, miR156, miR159, miR160, miR164, miR167, miR396, miR5200, etc. [score:1]
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6
[+] score: 26
One target of miR167, ARF8, positively regulates expression of OsGH3-2, a rice IAA-conjugating enzyme, and in turn participated in the control of cellular-free IAA levels [49]. [score:6]
Consistent with previous studies in wheat grains [18, 19], similar expression patterns were observed for several development-ralated miRNAs such as miR156, miR167 and miR827. [score:4]
It is noted that some development-related miRNAs including miR156, miR167 and miR827 were also indentified by previous studies [18, 19], demonstrating their important regulatory roles in wheat grain development. [score:4]
For 13 highly conserved miRNA families differentially expressed in wheat grain development (Fig 3), five (miR165/166, miR171, miR393, miR396 and miR444), three (miR156, miR164 and miR168), two (miR319 and miR827), one (miR408) and two miRNAs (miR159 and miR167) belonged to Group I, II, III, IV and V, respectively. [score:4]
Most verified targets/miRNA modules were highly conserved among monocots and dicots, such as SPLs/miR156, NACs/miR164, HOXs/miR166, ARFs/miR167, SCL1/miR171, TCPs/miR319, GRFs/miR396, SPX/miR827 (Fig 4A). [score:3]
The targets of miR167 encode ARF transcription factors, which confer auxin responses by activating or repressing auxin responsive genes in plants [48]. [score:3]
We also identified two development-related miRNAs (miR167 and miR393) involved in auxin signaling. [score:2]
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7
[+] score: 26
In contrast, expression of miR167 and miR396 isomiRs was induced by heat stress (Fig. S5d,e), while expression of three of the four miR399 isomiRs was upregulated from 3 to 10 DAT (Fig. S5f). [score:8]
MiR160 targeted stress responsive genes such as auxin response factors and drought-responsive factors, while MiR167 and miR396 are known to target signal transducers and nutrient reservoir activity, respectively. [score:5]
Inspite of differences between our studies in terms of genotypes (Glenlea vs HD2985), duration of heat stress exposure (5 days vs 2 hours), stage of sampling (boot stage vs seedling), nature of samples (leaf vs mixed), precursor evidence (~98,000 from the IWGSC draft assembly vs wheat ESTs) and method of differential expression analysis (edgeR vs log2 ratio), five major miRNA families (miR156, miR159, miR160, miR167 and miR398) associated with proteins of known heat signaling pathways were differentially expressed in both studies. [score:5]
On the other hand, increased miR167 levels and consequent reduction of its auxin response factor target impaired male and female fertility 56. [score:3]
Interestingly, miR396 and miR167 expression levels were induced with heat stress but were similar to control plants from day 7 onward. [score:3]
Families miR167, miR169 and miR398 were represented by variants of five to seven of the length between 18 to 24-mers while miRNAs from miR399 and miR5205 were all 21 nt-long (Fig. 2b). [score:1]
Also, miR396 and miR167 are involved in physiological adaptation including stomatal movement and cell division. [score:1]
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8
[+] score: 24
MiR160 was up-regulated and miR167 down-regulated in this study, which is similar to their expression profiles in Medicago in response to cold and freezing stresses [45]. [score:9]
Both miR160 and miR167 targets auxin-response factors (ARFs), but they displayed opposite expression patterns. [score:5]
Most highly abundant miRNAs were conserved miRNAs such as miR168, followed by miR166, miR167, and miR172, which also highly expressed in other plants [34, 44]. [score:3]
MiR167 is up regulated after drought stress in Aegilops tauschii, while down regulated in wheat [68]. [score:2]
In the biotic stress, miR167 were also involved in the defence responses to the infection of Puccinia striiformis f. sp. [score:1]
For the nutrient stresses, miR160 had a role in the N homeostasis [9], and miR167 was observed to responsive to Pi deprivation in wheat [9]. [score:1]
In wheat and Aegilops tauschii, miR167 exhibited the reverse responses to drought stress. [score:1]
In wheat, for example, miR160 and miR167 are involved in the response to multiple biotic and abiotic stresses [27, 28, 31, 32, 34, 65]. [score:1]
MiR169, miR172, miR156, miR319, miR159, and miR396 showed the cold-stress response in at least three species, and miR160, miR165, miR167, and miR171 overlapped with Populus, Arabidopsis, and Medicago (Additional file 1: Table S6). [score:1]
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9
[+] score: 18
miR167 regulates its target gene, ARF, which mediates plant root development [30, 37] and responds to drought stress [35]. [score:5]
miR167 target auxin response factor mediated plant root development [29, 30]. [score:4]
In another study, miRNA microarray analysis showed that miR156, miR167, miR164, miR319, miR396 and miR166 were up-regulated in leaf or root of bread wheat under drought stress [43]. [score:4]
Another identified target of miR167, IAA-Ala Resistant3 (IAR3) has the same roles as ARF in drought stress and root development [29]. [score:4]
Several known miRNAs (miR319, miR164, miR167, and miR156) are involved in drought response. [score:1]
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10
[+] score: 17
While 7 of the 9 known miRNAs tested (miR156, miR160, miR164, miR166a, miR167a, miR171a, miR396d) were down-regulated in root tissues, expression of miR1135 and miR5139 was comparable in root and shoot tissues. [score:6]
We analyzed the expression pattern of 9 known miRNAs (miR156, miR160, miR164, miR166a, miR167a, miR171a, miR396d, miR1135 and miR5139) and 9 true novel miRNAs (tae_6, tae_7, tae_10, tae_15, tae_19, tae_22, tae_27, tae_44 and tae_45) (Figure 4 and Figure S2). [score:3]
Previous studies have advocated the role of miR167 in flowering in Arabidopsis [57] and grain development in rice [58] and its enrichment in wheat spikelet indicates towards its importance in reproductive development in wheat. [score:3]
Surprisingly, out of 18 miRNAs tested in this study, 11 miRNAs (miR156, miR160, miR166a, miR167a, miR171a, tae_6, tae_7, tae_15, tae_19, tae_27 and tae_45) exhibited contrasting expression profile in seedlings exposed to mannitol as compared with the seedlings stressed with PEG (Figure 5A, B). [score:2]
Levels of 7 known miRNAs, except miR167a (which showed ∼2 fold accumulation) and miR5139 (which remained unaltered), were significantly lower in spikelet as compared to their expression in shoot tissue (Figure 4A). [score:2]
These 47 known miRNA sequences exhibited canonical hairpin loop structure and out of these only 8 miRNAs, namely miR156i-5p, miR164d, miR167, miR169, miR171, miR396a, miR396d and miR1432, were found to possess corresponding star sequences (also known as ‘3p sequence’) in the wheat putative sRNA population (Table S1 in File S1). [score:1]
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11
[+] score: 13
In fact, miR167a, miR397, miR156a, Ta-miR004-1-5p, Ta-miR044-1-3p,and miR827a were significantly up-regulated by 15 DAP and 25 DAP, with expression then peaking at 30 DAP (Figure  8). [score:6]
We verified the patterns of expression by five conserved wheat miRNAs -- miR167a, miR397, miR156a, miR1852, and miR827a – plus three novel miRNAs -- Ta-miR021-2-5p, Ta-miR004-1-5p, and Ta-miR044-1-3p. [score:3]
For example, miR167a, miR156a, and miR156c, were quite abundant, with expression levels at 5 DAP of 1825.73, 845.74, and 212.12 TPM, respectively (Additional file 4). [score:3]
Seven of them -- miR167a, miR397, miR156a, Ta-miR021-1-5p, Ta-miR004-1-5p, Ta-miR044-1-3p, and miR827a -- were predicted to be induced while miR1852 was expected to be repressed. [score:1]
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12
[+] score: 13
ARFs are transcription factors involved in auxin signal transduction during many stages of plant growth development, and they are considered to be critical for initiating cell division and differentiation of already differentiated cells before they can express embryogenic competence (Su and Zhang, 2009; Zhao et al., 2010), and ARF comprises a class of genes targeted by the miR167 families. [score:5]
In this study, the miR167 differentially expressed in low abundance. [score:3]
ARF8 was regulated by the miR167 in cultured rice cells (Yang et al., 2006). [score:2]
It suggested that miR167, novel-m0837_5p and novel-m0143_5p might be involved in embryogenic callus development. [score:2]
It was shown that when cells grew in auxin-free medium, miR167 level decreased and when grew in the medium containing auxin showed a reversed trend (Yang et al., 2006). [score:1]
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13
[+] score: 11
Similarly, six miRNAs were identified as UV-B-responsive miRNAs in wheat (Wang et al., 2013), in which miR159, miR167a, and miR171 are upregulated and miR156, miR164, miR395 are downregulated. [score:7]
Some of these upregulated miRNAs (miR156, miR160, miR165/166, miR167, miR398, and miR168) were also reported in UV-B-stressed Arabidopsis (Zhou et al., 2007). [score:4]
[1 to 20 of 2 sentences]
14
[+] score: 11
Here to verify aforementioned analysis, we analyzed the expression correlation between miRNAs targeted lincRNAs and functional genes using selected eight pair genes, which targeted by tae-miR1137a, ath-miR414, ath-miR5658, osa-miR1439, bdi-miR394, tae-miR167a, ata-miR160a-3p and ath-miR399b. [score:7]
Gene expression proved that they are implicated in Xingzi 9104 responding to stripe rust pathogene CYR 32, such as miR156, miR160, miR164, miR167, miR393, miR398, miR829, etc [33], while Xin et al substantiated that some of them are involved in powdery mildew stress [34]. [score:3]
They could bind to tae-miR167a, ath-miR390a, ata-miR156d-3p, ata-miR160a-3p, ath-miR394a, ata-miR395c-5p and ath-miR399b (Fig.   5) with a three-nucleotide bulge between the 5′ end 10th to 11th positions of miRNAs. [score:1]
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15
[+] score: 9
Other miRNAs from this paper: osa-MIR160a, osa-MIR160b, osa-MIR160c, osa-MIR160d, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR169a, osa-MIR395b, osa-MIR395d, osa-MIR395e, osa-MIR395g, osa-MIR395h, osa-MIR395i, osa-MIR395j, osa-MIR395k, osa-MIR395l, osa-MIR395s, osa-MIR395t, osa-MIR395c, osa-MIR395a, osa-MIR395f, osa-MIR395u, osa-MIR398a, osa-MIR398b, osa-MIR160e, osa-MIR160f, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR169b, osa-MIR169c, osa-MIR169d, osa-MIR169e, osa-MIR169f, osa-MIR169g, osa-MIR169h, osa-MIR169i, osa-MIR169j, osa-MIR169k, osa-MIR169l, osa-MIR169m, osa-MIR169n, osa-MIR169o, osa-MIR169p, osa-MIR169q, osa-MIR167j, osa-MIR437, osa-MIR395m, osa-MIR395n, osa-MIR395o, osa-MIR395p, osa-MIR395q, osa-MIR395v, osa-MIR395w, osa-MIR395r, osa-MIR818a, osa-MIR818b, osa-MIR818c, osa-MIR818d, osa-MIR818e, tae-MIR160, tae-MIR1117, tae-MIR1118, tae-MIR1120a, tae-MIR1122a, tae-MIR1125, tae-MIR1127a, tae-MIR1128, tae-MIR1131, tae-MIR1133, tae-MIR1135, tae-MIR1136, tae-MIR1139, osa-MIR169r, osa-MIR1436, osa-MIR1439, osa-MIR2118a, osa-MIR2118b, osa-MIR2118c, osa-MIR2118d, osa-MIR2118e, osa-MIR2118f, osa-MIR2118g, osa-MIR2118h, osa-MIR2118i, osa-MIR2118j, osa-MIR2118k, osa-MIR2118l, osa-MIR2118m, osa-MIR2118n, osa-MIR2118o, osa-MIR2118p, osa-MIR2118q, osa-MIR2118r, bdi-MIR167a, bdi-MIR1139, bdi-MIR1122, bdi-MIR437, bdi-MIR169b, bdi-MIR1127, bdi-MIR1135, osa-MIR395x, osa-MIR395y, tae-MIR167b, tae-MIR169, tae-MIR395a, tae-MIR395b, tae-MIR398, tae-MIR5085, bdi-MIR5070, bdi-MIR169d, bdi-MIR169i, bdi-MIR395a, bdi-MIR169j, bdi-MIR160a, bdi-MIR395b, bdi-MIR167b, bdi-MIR160b, bdi-MIR167c, bdi-MIR169k, bdi-MIR160c, bdi-MIR167d, bdi-MIR169g, bdi-MIR160d, bdi-MIR160e, bdi-MIR169e, bdi-MIR398a, bdi-MIR169a, bdi-MIR169h, bdi-MIR169c, bdi-MIR395c, bdi-MIR5180b, bdi-MIR5175a, bdi-MIR5175b, bdi-MIR395d, bdi-MIR398b, bdi-MIR5180a, bdi-MIR169f, bdi-MIR395m, bdi-MIR395e, bdi-MIR395f, bdi-MIR395g, bdi-MIR395h, bdi-MIR395j, bdi-MIR395k, bdi-MIR395l, bdi-MIR395n, osa-MIR818f, bdi-MIR167e, bdi-MIR395o, bdi-MIR395p, bdi-MIR5049, bdi-MIR160f, bdi-MIR167f, bdi-MIR167g, bdi-MIR169l, bdi-MIR169m, bdi-MIR169n, bdi-MIR395q, bdi-MIR2118a, bdi-MIR2118b, tae-MIR1122b, tae-MIR1127b, tae-MIR1122c, tae-MIR167c, tae-MIR5175, tae-MIR1120b, tae-MIR1120c, tae-MIR6197, tae-MIR5049
miRNA Name Species of target was identified Experimentally conformed target miR167 ath/osa Auxin response factors miR395 ath/osa ATP sulphurylase miR160 ath/osa Auxin response factors ath-Arabidopsis thaliana; osa-Oryza sativa. [score:5]
A total of 6 (out of 55) miRNAs; 4 (miR1136, miR1436, miR167, miR5205) from 5DL, 4 (miR1122, miR1136, miR1436, miR1439) from 5DS, and 2(miR1136 and miR1436) of which were located in both chromosome arms matched an EST with no significant similarity to known proteins (Table 3), suggesting that these putative pre-miRNA sequences are transcribed. [score:1]
Chr1 Chr2 Chr3 Chr4 Chr5 miR1127 * miR1128 * * * * * miR1133 * miR1135 * miR1139 * * * miR1439 * * * * * miR167 * miR395 * * miR5049 * * * * * miR5175 * * * miR5180 * * * miR5203 * * * * Bold miRNAs gave the best results that they were syntenic to Bd4. [score:1]
Independent studies in different plant species including A. thaliana, O. sativa,and Populus trichocarpashowed drought stress responsiveness of miR160,miR167, miR169, miR1125, and miR398, which were also found in wheat chromosome 5D [55]– [57]. [score:1]
Based on this analysis, miR1133 and miR167 were found to be present not only on 5DS but also in the syntenic region of Bd4 (Table 4). [score:1]
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Similarly, the expression levels of miR156, miR159, miR164, miR167a, miR171, miR395 and miR6000 have been shown to be altered in wheat under UV-B stress [13]. [score:3]
Interestingly, miR167 play roles in regulating the auxin-signaling pathway and possibly in the developmental response to cold stress [12]. [score:3]
In Arabidopsis, miR167, miR168, miR171, and miR396 are shown to be drought responsive [17]. [score:1]
For example, in the thermosensitive genic male sterile (TGMS) lines of wheat, miR167, miR172, miR393, miR396 and miR444c. [score:1]
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[+] score: 7
Other miRNAs from this paper: osa-MIR156a, osa-MIR156b, osa-MIR156c, osa-MIR156d, osa-MIR156e, osa-MIR156f, osa-MIR156g, osa-MIR156h, osa-MIR156i, osa-MIR156j, osa-MIR160a, osa-MIR160b, osa-MIR160c, osa-MIR160d, osa-MIR164a, osa-MIR164b, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR169a, osa-MIR171a, osa-MIR393a, osa-MIR396a, osa-MIR396b, osa-MIR396c, osa-MIR397a, osa-MIR397b, osa-MIR399a, osa-MIR399b, osa-MIR399c, osa-MIR399d, osa-MIR399e, osa-MIR399f, osa-MIR399g, osa-MIR399h, osa-MIR399i, osa-MIR399j, osa-MIR399k, osa-MIR156k, osa-MIR156l, osa-MIR159a, osa-MIR159b, osa-MIR159c, osa-MIR159d, osa-MIR159e, osa-MIR159f, osa-MIR319a, osa-MIR319b, osa-MIR160e, osa-MIR160f, osa-MIR164c, osa-MIR164d, osa-MIR164e, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR168a, osa-MIR168b, osa-MIR169b, osa-MIR169c, osa-MIR169d, osa-MIR169e, osa-MIR169f, osa-MIR169g, osa-MIR169h, osa-MIR169i, osa-MIR169j, osa-MIR169k, osa-MIR169l, osa-MIR169m, osa-MIR169n, osa-MIR169o, osa-MIR169p, osa-MIR169q, osa-MIR171b, osa-MIR171c, osa-MIR171d, osa-MIR171e, osa-MIR171f, osa-MIR171g, osa-MIR172a, osa-MIR172b, osa-MIR172c, osa-MIR171h, osa-MIR393b, osa-MIR408, osa-MIR172d, osa-MIR171i, osa-MIR167j, osa-MIR164f, osa-MIR390, osa-MIR439a, osa-MIR439b, osa-MIR439c, osa-MIR439d, osa-MIR439e, osa-MIR439f, osa-MIR439g, osa-MIR439h, osa-MIR439i, osa-MIR396e, osa-MIR444a, tae-MIR159a, tae-MIR159b, tae-MIR160, tae-MIR164, tae-MIR171a, tae-MIR399, tae-MIR408, tae-MIR444a, osa-MIR169r, osa-MIR444b, osa-MIR444c, osa-MIR444d, osa-MIR444e, osa-MIR444f, osa-MIR396f, osa-MIR396g, osa-MIR396h, osa-MIR396d, tae-MIR156, tae-MIR319, tae-MIR167b, tae-MIR169, tae-MIR444b, tae-MIR171b, tae-MIR396, tae-MIR167c, tae-MIR397
Twelve conserved miRNA families (miR156/157, miR159/319, miR160, miR164, miR165/166, miR167, miR169, miR170/171, miR172 and miR444) have been predicted to target 24 transcription factors, including squamosa promoter binding proteins, MYB, NAC1, homeodomain-leucine zipper protein, auxin response factor, CCAAT -binding protein, scarecrow-like protein, APETELA2 protein and MADS box protein (Additional data file 2). [score:3]
These include miRNA156/157, miR159, miR160, miR164, miR165/166, miR167, miR168, miR169, miR170/171, miR172, miR319, miR390, miR393, miR396, miR397, miR399 and miR408, which are conserved in diverse plant species (Table 2). [score:1]
This analysis revealed perfect matching of nine miRNA families, miR159, miR160, miR164, miR167, miR169, miR170, miR399, miR408 and miR444, to 14 ESTs. [score:1]
Furthermore, our analysis revealed that the library included all known members of several miRNA families: miR156, miR159, miR167, miR169, miR168, miR171 and miR172. [score:1]
MiR169 was represented by five members, miR156, miR165/166, miR167, miR170/171 and miR172 were represented by three members each, and miR159, miR319 and miR168 were represented by two members each in the library. [score:1]
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[+] score: 5
We also found 8 cases (miR156, miR159, miR172, miR167, miR169, miR396, miR399 and miR818) where all the members of a miRNA family were expressed at similar pattern in response to powdery mildew infection or heat stress. [score:3]
Previous studies revealed that miR160, miR166, miR167 and miR393 may involve in auxin signaling pathway by regulating different transcription factors. [score:2]
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[+] score: 4
For example, miR166, miR167, miR168, miR159, miR528, and miR5062 exhibited a relatively high expression level across the two small RNA libraries (>25,000 each, data not shown). [score:3]
However, highly abundant miRNAs, such as miR166, miR167, miR168, miR159, miR528, and miR5062, in wild-type and mutant libraries did not show significant fold change. [score:1]
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Many ARF members are known to be regulated by miR167 and miR160 and to play regulatory roles in adventitious rooting [58], supporting the possible role of apMir_22246 in root development under Al treatment. [score:4]
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[+] score: 4
Other miRNAs from this paper: osa-MIR156a, osa-MIR156b, osa-MIR156c, osa-MIR156d, osa-MIR156e, osa-MIR156f, osa-MIR156g, osa-MIR156h, osa-MIR156i, osa-MIR156j, osa-MIR160a, osa-MIR160b, osa-MIR160c, osa-MIR160d, osa-MIR164a, osa-MIR164b, osa-MIR166a, osa-MIR166b, osa-MIR166c, osa-MIR166d, osa-MIR166e, osa-MIR166f, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR169a, osa-MIR396a, osa-MIR396b, osa-MIR396c, osa-MIR397a, osa-MIR397b, osa-MIR398a, osa-MIR398b, osa-MIR156k, osa-MIR156l, osa-MIR159a, osa-MIR159b, osa-MIR159c, osa-MIR159d, osa-MIR159e, osa-MIR159f, osa-MIR160e, osa-MIR160f, osa-MIR164c, osa-MIR164d, osa-MIR164e, osa-MIR166k, osa-MIR166l, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR168a, osa-MIR168b, osa-MIR169b, osa-MIR169c, osa-MIR169d, osa-MIR169e, osa-MIR169f, osa-MIR169g, osa-MIR169h, osa-MIR169i, osa-MIR169j, osa-MIR169k, osa-MIR169l, osa-MIR169m, osa-MIR169n, osa-MIR169o, osa-MIR169p, osa-MIR169q, osa-MIR171b, osa-MIR172a, osa-MIR172b, osa-MIR172c, osa-MIR166g, osa-MIR166h, osa-MIR166i, osa-MIR172d, osa-MIR167j, osa-MIR166m, osa-MIR166j, osa-MIR164f, zma-MIR156d, zma-MIR156f, zma-MIR156g, zma-MIR156b, zma-MIR156c, zma-MIR156e, zma-MIR156a, zma-MIR156h, zma-MIR156i, zma-MIR160a, zma-MIR160c, zma-MIR160d, zma-MIR160b, zma-MIR164a, zma-MIR164d, zma-MIR164b, zma-MIR164c, zma-MIR169a, zma-MIR169b, zma-MIR167a, zma-MIR167b, zma-MIR167d, zma-MIR167c, zma-MIR160e, zma-MIR166a, zma-MIR166h, zma-MIR166e, zma-MIR166i, zma-MIR166f, zma-MIR166g, zma-MIR166b, zma-MIR166c, zma-MIR166d, zma-MIR171b, zma-MIR172a, zma-MIR172d, zma-MIR172b, zma-MIR172c, osa-MIR396e, zma-MIR396b, zma-MIR396a, zma-MIR156j, zma-MIR159a, zma-MIR159b, zma-MIR159c, zma-MIR159d, zma-MIR166k, zma-MIR166j, zma-MIR167e, zma-MIR167f, zma-MIR167g, zma-MIR167h, zma-MIR167i, zma-MIR168a, zma-MIR168b, zma-MIR169c, zma-MIR169f, zma-MIR169g, zma-MIR169h, zma-MIR169i, zma-MIR169k, zma-MIR169j, zma-MIR169d, zma-MIR169e, zma-MIR172e, zma-MIR166l, zma-MIR166m, zma-MIR156k, zma-MIR160f, tae-MIR159a, tae-MIR159b, tae-MIR160, tae-MIR164, tae-MIR1127a, osa-MIR169r, osa-MIR396f, zma-MIR396c, zma-MIR396d, osa-MIR2275a, osa-MIR2275b, zma-MIR2275a, zma-MIR2275b, zma-MIR2275c, zma-MIR2275d, osa-MIR396g, osa-MIR396h, osa-MIR396d, zma-MIR156l, zma-MIR159e, zma-MIR159f, zma-MIR159g, zma-MIR159h, zma-MIR159i, zma-MIR159j, zma-MIR159k, zma-MIR160g, zma-MIR164e, zma-MIR164f, zma-MIR164g, zma-MIR164h, zma-MIR166n, zma-MIR167j, zma-MIR169l, zma-MIR169m, zma-MIR169n, zma-MIR169o, zma-MIR169p, zma-MIR169q, zma-MIR169r, zma-MIR396e, zma-MIR396f, zma-MIR396g, zma-MIR396h, zma-MIR397a, zma-MIR397b, zma-MIR398a, zma-MIR398b, hvu-MIR156a, tae-MIR156, hvu-MIR159b, hvu-MIR159a, hvu-MIR166a, tae-MIR167b, hvu-MIR168, hvu-MIR169, tae-MIR169, hvu-MIR397a, tae-MIR398, tae-MIR171b, hvu-MIR166b, hvu-MIR166c, osa-MIR2275c, osa-MIR2275d, tae-MIR1122b, tae-MIR9653a, tae-MIR9654a, tae-MIR9656, tae-MIR9657a, tae-MIR9659, tae-MIR9660, tae-MIR1127b, tae-MIR9661, tae-MIR396, tae-MIR9665, tae-MIR2275, tae-MIR9667, tae-MIR167c, tae-MIR1120b, tae-MIR397, tae-MIR1130b, tae-MIR5384, tae-MIR9675, tae-MIR1120c, tae-MIR9679, tae-MIR9657b, hvu-MIR397b, hvu-MIR156b, tae-MIR9653b
Of the 15 known miRNA families, 8 (miR396, miR168, miR156, miR172, miR159, miR398, miR1318 and miR167) showed different levels of preferential expression in wheat flag leaves, with the logarithm of the fold changes ranged from 0.5 to 5.2 as well as more than those in the developing seeds (Figure  3a, Table  2). [score:3]
The highest read abundance (approximately 238,000 RPM) was detected in the miR168 family and was 3.8 to 78 times more abundant than the other miRNA families, including miR156, miR166, miR167 and miR172, whose abundance ranged from about 2,900 RPM to 62,000 RPM (Table  2). [score:1]
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[+] score: 3
A set of miRNA members, such as miR156, miR159, miR167, miR168, miR171, miR319, and miR396 of Arabidopsis, exhibit altered expression levels upon salt (Yu et al., 2005; Ding et al., 2009). [score:3]
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[+] score: 3
Other miRNAs from this paper: osa-MIR156a, osa-MIR156b, osa-MIR156c, osa-MIR156d, osa-MIR156e, osa-MIR156f, osa-MIR156g, osa-MIR156h, osa-MIR156i, osa-MIR156j, osa-MIR162a, osa-MIR164a, osa-MIR166a, osa-MIR166b, osa-MIR166c, osa-MIR166d, osa-MIR166e, osa-MIR166f, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR394, osa-MIR395b, osa-MIR395d, osa-MIR395e, osa-MIR395g, osa-MIR395h, osa-MIR395i, osa-MIR395j, osa-MIR395k, osa-MIR395l, osa-MIR395s, osa-MIR395t, osa-MIR395c, osa-MIR395a, osa-MIR395f, osa-MIR395u, osa-MIR396a, osa-MIR396b, osa-MIR396c, osa-MIR397a, osa-MIR397b, osa-MIR398a, osa-MIR398b, osa-MIR399a, osa-MIR399b, osa-MIR399c, osa-MIR399d, osa-MIR399e, osa-MIR399f, osa-MIR399g, osa-MIR399h, osa-MIR399i, osa-MIR399j, osa-MIR399k, osa-MIR156k, osa-MIR156l, osa-MIR159b, osa-MIR162b, osa-MIR166k, osa-MIR166l, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR168a, osa-MIR168b, osa-MIR172a, osa-MIR172b, osa-MIR172c, osa-MIR166g, osa-MIR166h, osa-MIR166i, osa-MIR408, osa-MIR172d, osa-MIR167j, osa-MIR166m, osa-MIR166j, osa-MIR437, osa-MIR396e, osa-MIR444a, osa-MIR528, osa-MIR529a, osa-MIR395m, osa-MIR395n, osa-MIR395o, osa-MIR395p, osa-MIR395q, osa-MIR395v, osa-MIR395w, osa-MIR395r, osa-MIR529b, tae-MIR159b, tae-MIR399, tae-MIR408, tae-MIR444a, osa-MIR1432, osa-MIR444b, osa-MIR444c, osa-MIR444d, osa-MIR444e, osa-MIR444f, osa-MIR1848, osa-MIR1858a, osa-MIR1858b, osa-MIR1862a, osa-MIR1862b, osa-MIR1862c, osa-MIR1871, osa-MIR1862d, osa-MIR1862e, osa-MIR827, osa-MIR396f, osa-MIR396g, osa-MIR396h, osa-MIR396d, osa-MIR395x, osa-MIR395y, hvu-MIR156a, tae-MIR156, hvu-MIR159b, hvu-MIR166a, tae-MIR167b, hvu-MIR168, tae-MIR395a, tae-MIR395b, hvu-MIR397a, tae-MIR398, tae-MIR444b, hvu-MIR166b, hvu-MIR444a, osa-MIR1862f, osa-MIR1862g, hvu-MIR399, hvu-MIR444b, hvu-MIR166c, tae-MIR396, tae-MIR167c, tae-MIR397, hvu-MIR397b, hvu-MIR156b
On the other hand, we see evidence of strong expression of miR167, miR529, miR1318/1432, while these were not detected in [28]. [score:3]
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[+] score: 2
Other miRNAs from this paper: tae-MIR399, tae-MIR167b, tae-MIR169, tae-MIR167c
Three other miRNA families with well-established roles in plants, miR167, miR169 and miR399, were also prominent (10.1%, 6.9% and 7.8%, respectively) among miRNAs putatively encoded by Tdic5B. [score:1]
Additionally, Tdic5B was found to encode 11 members of miR167 family, 10 members of miR169 family and 6 members of miR399 family. [score:1]
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[+] score: 1
Gupta et al. (2012a) reported that miR167, miR171, miR444, miR1129, and miR1138 are players in resistance of wheat against rust. [score:1]
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Sixteen miRNA families were shown to be putatively present on chromosome 5A: two of them (miR164 and miR167) were found only in the short arm, three families (miR156, miR399 and miR2118) were found only in the long arm, while the remaining eleven families were found in both arms (Table 3). [score:1]
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Moreover, we also identified 30 wheat-specific variants from 9 highly conserved miRNA families, including miR159, miR160, miR167, miR169, miR171, miR172, miR393, miR396 and miR398 families (Additional file 3: Table S3). [score:1]
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Six miRNA families, osa-miR159, osa-miR160, osamiR164, osa-miR167, osa-miR172, and osa-miR1848, were shown to be associated with the rice leaf senescence processes through hormone signaling pathways. [score:1]
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