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2 publications mentioning rco-MIR393

Open access articles that are associated with the species Ricinus communis and mention the gene name MIR393. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

1
[+] score: 32
Other miRNAs from this paper: rco-MIR156a, rco-MIR156b, rco-MIR156c, rco-MIR156d, rco-MIR156e, rco-MIR156f, rco-MIR156g, rco-MIR156h, rco-MIR159, rco-MIR160a, rco-MIR160b, rco-MIR162, rco-MIR164a, rco-MIR164b, rco-MIR164c, rco-MIR164d, rco-MIR166a, rco-MIR166b, rco-MIR166c, rco-MIR166d, rco-MIR166e, rco-MIR167a, rco-MIR167b, rco-MIR167c, rco-MIR168, rco-MIR169a, rco-MIR169b, rco-MIR169c, rco-MIR171a, rco-MIR171b, rco-MIR171c, rco-MIR171d, rco-MIR171e, rco-MIR171f, rco-MIR171g, rco-MIR172, rco-MIR319a, rco-MIR319b, rco-MIR319c, rco-MIR319d, rco-MIR390a, rco-MIR390b, rco-MIR395a, rco-MIR395b, rco-MIR395c, rco-MIR395d, rco-MIR395e, rco-MIR396, rco-MIR398a, rco-MIR398b, rco-MIR399a, rco-MIR399b, rco-MIR399c, rco-MIR399d, rco-MIR399e, rco-MIR399f, rco-MIR408, rco-MIR160c, mes-MIR159a, mes-MIR167a, mes-MIR168a, mes-MIR171a, mes-MIR172a, mes-MIR399a, mes-MIR408, mes-MIR156a, mes-MIR156b, mes-MIR156c, mes-MIR156d, mes-MIR156e, mes-MIR156f, mes-MIR156g, mes-MIR156h, mes-MIR156i, mes-MIR156j, mes-MIR156k, mes-MIR159b, mes-MIR159c, mes-MIR159d, mes-MIR160a, mes-MIR160b, mes-MIR160c, mes-MIR160d, mes-MIR160e, mes-MIR160f, mes-MIR160g, mes-MIR160h, mes-MIR162, mes-MIR164a, mes-MIR164b, mes-MIR164c, mes-MIR164d, mes-MIR166a, mes-MIR166b, mes-MIR166c, mes-MIR166d, mes-MIR166e, mes-MIR166f, mes-MIR166g, mes-MIR166h, mes-MIR166i, mes-MIR166j, mes-MIR167b, mes-MIR167c, mes-MIR167d, mes-MIR167e, mes-MIR167f, mes-MIR167g, mes-MIR167h, mes-MIR169a, mes-MIR169b, mes-MIR169c, mes-MIR169d, mes-MIR169e, mes-MIR169f, mes-MIR169g, mes-MIR169h, mes-MIR169i, mes-MIR169j, mes-MIR169k, mes-MIR169l, mes-MIR169m, mes-MIR169n, mes-MIR169o, mes-MIR169p, mes-MIR169q, mes-MIR169r, mes-MIR169s, mes-MIR169t, mes-MIR169u, mes-MIR169v, mes-MIR169w, mes-MIR169x, mes-MIR169y, mes-MIR169z, mes-MIR169aa, mes-MIR169ab, mes-MIR169ac, mes-MIR171b, mes-MIR171c, mes-MIR171d, mes-MIR171e, mes-MIR171f, mes-MIR171g, mes-MIR171h, mes-MIR171i, mes-MIR171j, mes-MIR171k, mes-MIR172b, mes-MIR172c, mes-MIR172d, mes-MIR172e, mes-MIR172f, mes-MIR319a, mes-MIR319b, mes-MIR319c, mes-MIR319d, mes-MIR319e, mes-MIR319f, mes-MIR319g, mes-MIR319h, mes-MIR390, mes-MIR393a, mes-MIR393b, mes-MIR393c, mes-MIR393d, mes-MIR395a, mes-MIR395b, mes-MIR395c, mes-MIR395d, mes-MIR395e, mes-MIR396a, mes-MIR396b, mes-MIR396c, mes-MIR396d, mes-MIR396e, mes-MIR396f, mes-MIR399b, mes-MIR399c, mes-MIR399d, mes-MIR399e, mes-MIR399f, mes-MIR399g, mes-MIR477h, mes-MIR477i, mes-MIR477a, mes-MIR477b, mes-MIR477c, mes-MIR477d, mes-MIR477e, mes-MIR477f, mes-MIR477g, mes-MIR482, mes-MIR828a, mes-MIR828b, mes-MIR171l, mes-MIR398, mes-MIR399h, mes-MIR477j, mes-MIR477k, mes-MIR2118, mes-MIR3627, mes-MIR169ad
miR167, miR390 and miR393 were also differentially expressed under chilling stress; miR167 was up-regulated under CA while miR393 was up-regulated under CCA in reference to the normal condition. [score:9]
As expected, the three TAS3 loci and the targeting miRNA (i. e., miR390), 3 auxin response factors, and auxin signaling F-box genes were targeted by miR167 and miR393 and two GRAS family transcription factors were targets of miR171. [score:7]
Besides, dysregulated miR393 targets auxin signaling F-box, an important auxin receptor gene in the auxin signaling pathway. [score:4]
CS 11(2), 1(6), 0(1) miR390-TAS3c binding site #2 CA + CCA 5(1) CS 5(1) miR167-ARF8 CA + CCA 9(1), 7(1) 001923 m ARF8 auxin response factor 8 miR393-ABF3 NC 10(1), 17(1) 004520 m AFB3 auxin signaling F-box 3 CA + CCA 11(8) CS 11(7) tasiAFR3-ARF3 CA + CCA 11(1) 002399 m ETT/ARF3 Transcriptional factor B3 family protein/auxin-responsive factor AUX/IAA-related CS 11(6) tasiARF1-ARF3 CS 11(1) 002399 m ETT/ARF3 tasiARF1-ARF4 CA + CCA 10(1) 001979 m ARF4 auxin response factor 4 CS 10(1) tasiARF2-NAC2 CS 11(2) 027253 m NAC2 NAC domain containing protein 2 siReport31-CUL4 CA + CCA 18(1) 001768 m CUL4 cullin4 Each target site was detected by ten clones. [score:3]
The miRNAs that we tested could indeed cleave their targets, as shown by the cleavage sites of miR167 on ARF8 and that of miR393 on ABF3 (Table  4). [score:3]
For example, miR167 and miR393 were reported to be dysregulated in Cassava of the current study and A. thaliana and wheat [40, 42, 43]. [score:2]
Besides, miR393 -mediated auxin signaling F-box (AFB) genes in Arabidopsis and our current study on Cassava can further produce siRNAs, which potentially carry out a self regulation on AFB genes [16]. [score:2]
Another 10 annotated miRNA families – miR159, miR162, miR164, miR167, miR168, miR169, miR172, miR393, miR396, and miR398 – were also conserved in at least eight species (Table  2). [score:1]
Under a biotic stress, repressing of auxin signaling by miR393 has been shown to contribute to antibacterial resistance to P. syringae in Arabidopsis [51]. [score:1]
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2
[+] score: 4
High-throughput sequencing produced a large number of miRNA sequences, allowing us to determine the relative abundance of miRNAs in castor bean; the frequencies of miRNA families varied largely in different libraries, e. g. most members of miRNA156, miRNA167, miRNA168, miRNA535 were abundant in all libraries, whereas members of miRNA160, miRNA169, miRNA319, miRNA393, miRNA395, miRNA398 and miRNA399 were scarce in all libraries (see Table 2), indicating that expression level of miRNAs varies significantly among different miRNA families in castor bean. [score:3]
In the other cases such as miR393, miR396 and miR403, isoform variants were produced due to the 1–3 nucleotide addition or deletion in the 3 strand of miRNAs. [score:1]
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