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13 publications mentioning hvu-MIR168

Open access articles that are associated with the species Hordeum vulgare and mention the gene name MIR168. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

1
[+] score: 21
Other miRNAs from this paper: osa-MIR156a, osa-MIR156b, osa-MIR156c, osa-MIR156d, osa-MIR156e, osa-MIR156f, osa-MIR156g, osa-MIR156h, osa-MIR156i, osa-MIR156j, osa-MIR166a, osa-MIR166b, osa-MIR166c, osa-MIR166d, osa-MIR166e, osa-MIR166f, osa-MIR171a, osa-MIR393a, osa-MIR397a, osa-MIR397b, osa-MIR156k, osa-MIR156l, osa-MIR159a, osa-MIR159b, osa-MIR159c, osa-MIR159d, osa-MIR159e, osa-MIR159f, osa-MIR319b, osa-MIR166k, osa-MIR166l, osa-MIR168a, osa-MIR168b, osa-MIR169f, osa-MIR171b, osa-MIR171c, osa-MIR171d, osa-MIR171e, osa-MIR171f, osa-MIR171g, osa-MIR172a, osa-MIR172b, osa-MIR172c, osa-MIR166g, osa-MIR166h, osa-MIR166i, osa-MIR171h, osa-MIR393b, osa-MIR172d, osa-MIR171i, osa-MIR166m, osa-MIR166j, zma-MIR156d, zma-MIR156f, zma-MIR156g, zma-MIR156b, zma-MIR156c, zma-MIR156e, zma-MIR156a, zma-MIR156h, zma-MIR156i, zma-MIR166a, zma-MIR166h, zma-MIR166e, zma-MIR166i, zma-MIR166f, zma-MIR166g, zma-MIR166b, zma-MIR166c, zma-MIR166d, zma-MIR171a, zma-MIR171b, zma-MIR172a, zma-MIR172d, zma-MIR172b, zma-MIR172c, zma-MIR171d, zma-MIR171f, zma-MIR156j, zma-MIR159a, zma-MIR159b, zma-MIR159c, zma-MIR159d, zma-MIR319b, zma-MIR166k, zma-MIR166j, zma-MIR168a, zma-MIR168b, zma-MIR169f, zma-MIR171c, zma-MIR171j, zma-MIR171e, zma-MIR171i, zma-MIR171g, zma-MIR172e, zma-MIR166l, zma-MIR166m, zma-MIR171k, zma-MIR171h, zma-MIR393a, zma-MIR156k, osa-MIR529a, tae-MIR159a, tae-MIR159b, tae-MIR171a, tae-MIR1120a, osa-MIR1430, zma-MIR156l, zma-MIR159e, zma-MIR159f, zma-MIR159g, zma-MIR159h, zma-MIR159i, zma-MIR159j, zma-MIR159k, zma-MIR166n, zma-MIR171l, zma-MIR171m, zma-MIR171n, zma-MIR393b, zma-MIR393c, zma-MIR397a, zma-MIR397b, hvu-MIR156a, tae-MIR156, hvu-MIR159b, hvu-MIR159a, hvu-MIR166a, hvu-MIR171, hvu-MIR397a, tae-MIR171b, hvu-MIR1120, hvu-MIR166b, osa-MIR3981, hvu-MIR166c, tae-MIR1120b, tae-MIR397, tae-MIR1120c, hvu-MIR397b, hvu-MIR156b
Interestingly, in addition to the expression of mature miR168-5p, we also observed the expression of miR168-3p (Figure 4E). [score:5]
The expression profiles of miRNA168-5p/168-3p in particular developmental stages also differed, which may suggest a functional role of both miRNA species, as was reported for miR319b and miR319b. [score:4]
The expression level of the mature miR168-5p is notably stronger than the miR168-3p. [score:3]
In Arabidopsis, miR168 targets mRNA coding for the Argonaute (AGO1) protein, which is crucial for miRNA function; hence miR168 is involved in a negative-feedback mechanism for controlling all miRNAs biogenesis [58, 62]. [score:3]
It should be noted that a target mRNA sequence for the miR168-3p molecule has not yet been identified. [score:3]
There are two possible explanations for this observation: (i) as postulated for rice and maize, both miR168-5p and miR168-3p molecules could be functional in barley [57, 63] or (ii) miR168-3p represents a relatively stable molecule of miRNA*. [score:1]
Detection of pri-, pre-, and mature miR168-5p and miR168a-3p. [score:1]
The detailed structures of MIR168a-5p/168a-3p gene and its pre-miRNA are shown in Figure 4A and B. miR168 is a relatively small family consisting of only two members in A. thaliana (miR168a and miR168b), three members in O. sativa (miR168a-5p/miR168a-3p, miR168b) and four in Zea mays (miR168a-5p/168a-3p, miR168b5-p/miR168b-3p) [3, 4, 8, 56]. [score:1]
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2
[+] score: 21
Three miRNAs (hvu-miR168-5p, hvu-miR5048a and hvu-miR444b) were down-regulated while two other miRNAs (hvu-miR171-5p and hvu-miR6213) were up-regulated under salinity stress. [score:7]
In this study, miR168 was found to be a salinity responsive miRNA and down-regulated at the 3h and 8h time points. [score:4]
Among them, miR159, miR164, miR167 miR168, miR171, miR172 and miR393 have been demonstrated to be involved in signal transduction by targeting MYB transcription factor, F-box and Nodulation signaling pathway 2 proteins. [score:3]
26206) were also found targeted by miR168 in barley [54]. [score:3]
In plants such as Arabidopsis [5], maize [52] and cotton [53], miR168 was detected to target AGO1 (ARGONAUTE 1)) gene and involved in miRNAs biogenesis and function. [score:3]
In addition, we have identified both mature and star sequences for two barley miRNAs (hvu-miR168 and hvu-miR171). [score:1]
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3
[+] score: 18
Expression of some conserved miRNA families such as miR156 and miR6213 has been detected as upregulated while miR168, miR444, and miR5048 have shown suppressed expression patterns in response to salinity stress in barley (Lv et al. 2012; Deng et al. 2015). [score:10]
As the braAGO1 expression levels were also significantly different between embryos of stressed and control plants, AGO1 -regulating activity of miR168 highlighted the potential role of this miRNA as a putative epigenetic stress memory messenger (Bilichak et al. 2015). [score:4]
Common miRNA families that are differentially expressed in pollen, endosperm, and leaf tissues of treated parents and non -treated progenies included bra-miR167, bra-miR390, and bra-miR168. [score:3]
durum, T. aestivum –Liu et al. 2015a, Ma et al. 2015, Akpinar and Budak 2016 miR168 T. aestivum –Gupta et al. 2014, Ma et al. 2015 miR169 H. vulgare –Hackenberg et al. 2014 miR171 T. turgidum ssp. [score:1]
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4
[+] score: 17
Although we could not identify miR168 -mediated target sliced products because of the different samples used in sRNA sequencing and degradome analysis, miR168 was predicted to target AGO1 based on degradome sequencing using boron -treated barley seedling samples [54]. [score:5]
Notably, we found that miR5565 and miR2199 were significantly and highly expressed in barley embryos during seed germination, whereas miR156, miR166, miR167, and miR168 accumulated in both the seed development and germination stages (Fig. 2). [score:4]
miR168, which has been found to respond to salt, drought, and cold stresses or ABA treatment in previous studies, was the second most highly expressed miRNA in embryo tissue. [score:3]
Conserved miRNA families such as miR156, miR168, miR166, miR167, and miR894 were highly expressed in embryos of developing and germinating seeds. [score:3]
Among them, four miRNAs including miR156, miR167, miR166, and miR894 are conserved in all plant species registered in miRBase; three miRNAs (miR168, miR2118, and miR164) are conserved among angiosperm; six miRNAs (miR2916, miR6441, miR2199, miR7696, miR8124, and miR6300) are detected only in dicotyledons; and five miRNAs (miR5565, miR1869, miR5813, miR5071, and miR5060) seem to be conserved families across grass families. [score:1]
In addition, we found that miR168 accumulated to a high level in the three samples tested, suggesting that miR168 might be influenced by ABA in seed and probably participate in stress response during seed desiccation and germination. [score:1]
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[+] score: 12
For example, the target transcript of miR168 was ARGONAUTE1 protein (AGO1) family protein, which functions in plant development and in response to stress stimulus, such as NaCl and mannitol stress in rice. [score:4]
miR168, miR319, miR396, and miR397 were induced by drought in Arabidopsis thaliana but were suppressed in Oryza sativa [59]. [score:3]
Although miR168 was induced, miR159, miR396, miR1120 and miR5048 were inhibited in both root and leaf upon excess boron exposure. [score:3]
Both conserved barley miRNAs (miR156, miR159, miR164, miR166, miR168, miR171, miR395 and miR396) and non-conserved barley miRNAs (miR1120 and miR5048) were detected. [score:1]
For example, miR168 and miR2910 may have a role in plant reproduction, whereas miR160, miR2014 and miR2916 might be associated with signal transduction. [score:1]
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[+] score: 12
Other miRNAs from this paper: hvu-MIR159b, hvu-MIR159a, hvu-MIR5048a, hvu-MIR5048b
Genome-wide deep sequencing of peach also indicated that there was no change in the expression of miR168 in drought-stressed leaf and root tissues [65]. [score:3]
The miRNAs, miR168 and miR159, behaved very differently from each other as reference genes in the experiments reported here, underlining the importance of empirical selection and knowledge of the individual gene’s differential expression with treatment. [score:3]
Our results confirmed the comparatively consistent stability of miR168 as a reference gene under each of the experimental conditions, where it ranked in the top five using the three algorithms. [score:1]
Under salt and nitrate treatments miR168 was the most stable reference gene. [score:1]
The sequences of miR168 (accession number MIMAT0018216) and miR159 (accession number MIMAT0018210) were obtained from miRBase (http://www. [score:1]
miR168 was selected as a candidate because it was reportedly not significantly affected by drought in Arabidopsis [63] and rice [64]. [score:1]
Four common HKGs (ACT, α-TUB, GAPDH and ADP), four snoRNAs (U18, U61, snoR14 and snoR23) and two miRNAs (miR168 and miR159) were selected. [score:1]
In our study, we evaluated the expression stabilities of ten candidate reference genes, ACT, α-TUB, GAPDH, ADP, snoR14, snoR23, U61, U18, miR159 and miR168, in samples from barley plants grown in five stressed conditions. [score:1]
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[+] score: 7
Other miRNAs from this paper: osa-MIR156a, osa-MIR156b, osa-MIR156c, osa-MIR156d, osa-MIR156e, osa-MIR156f, osa-MIR156g, osa-MIR156h, osa-MIR156i, osa-MIR156j, osa-MIR160a, osa-MIR160b, osa-MIR160c, osa-MIR160d, osa-MIR164a, osa-MIR164b, osa-MIR166a, osa-MIR166b, osa-MIR166c, osa-MIR166d, osa-MIR166e, osa-MIR166f, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR169a, osa-MIR396a, osa-MIR396b, osa-MIR396c, osa-MIR397a, osa-MIR397b, osa-MIR398a, osa-MIR398b, osa-MIR156k, osa-MIR156l, osa-MIR159a, osa-MIR159b, osa-MIR159c, osa-MIR159d, osa-MIR159e, osa-MIR159f, osa-MIR160e, osa-MIR160f, osa-MIR164c, osa-MIR164d, osa-MIR164e, osa-MIR166k, osa-MIR166l, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR168a, osa-MIR168b, osa-MIR169b, osa-MIR169c, osa-MIR169d, osa-MIR169e, osa-MIR169f, osa-MIR169g, osa-MIR169h, osa-MIR169i, osa-MIR169j, osa-MIR169k, osa-MIR169l, osa-MIR169m, osa-MIR169n, osa-MIR169o, osa-MIR169p, osa-MIR169q, osa-MIR171b, osa-MIR172a, osa-MIR172b, osa-MIR172c, osa-MIR166g, osa-MIR166h, osa-MIR166i, osa-MIR172d, osa-MIR167j, osa-MIR166m, osa-MIR166j, osa-MIR164f, zma-MIR156d, zma-MIR156f, zma-MIR156g, zma-MIR156b, zma-MIR156c, zma-MIR156e, zma-MIR156a, zma-MIR156h, zma-MIR156i, zma-MIR160a, zma-MIR160c, zma-MIR160d, zma-MIR160b, zma-MIR164a, zma-MIR164d, zma-MIR164b, zma-MIR164c, zma-MIR169a, zma-MIR169b, zma-MIR167a, zma-MIR167b, zma-MIR167d, zma-MIR167c, zma-MIR160e, zma-MIR166a, zma-MIR166h, zma-MIR166e, zma-MIR166i, zma-MIR166f, zma-MIR166g, zma-MIR166b, zma-MIR166c, zma-MIR166d, zma-MIR171b, zma-MIR172a, zma-MIR172d, zma-MIR172b, zma-MIR172c, osa-MIR396e, zma-MIR396b, zma-MIR396a, zma-MIR156j, zma-MIR159a, zma-MIR159b, zma-MIR159c, zma-MIR159d, zma-MIR166k, zma-MIR166j, zma-MIR167e, zma-MIR167f, zma-MIR167g, zma-MIR167h, zma-MIR167i, zma-MIR168a, zma-MIR168b, zma-MIR169c, zma-MIR169f, zma-MIR169g, zma-MIR169h, zma-MIR169i, zma-MIR169k, zma-MIR169j, zma-MIR169d, zma-MIR169e, zma-MIR172e, zma-MIR166l, zma-MIR166m, zma-MIR156k, zma-MIR160f, tae-MIR159a, tae-MIR159b, tae-MIR160, tae-MIR164, tae-MIR167a, tae-MIR1127a, osa-MIR169r, osa-MIR396f, zma-MIR396c, zma-MIR396d, osa-MIR2275a, osa-MIR2275b, zma-MIR2275a, zma-MIR2275b, zma-MIR2275c, zma-MIR2275d, osa-MIR396g, osa-MIR396h, osa-MIR396d, zma-MIR156l, zma-MIR159e, zma-MIR159f, zma-MIR159g, zma-MIR159h, zma-MIR159i, zma-MIR159j, zma-MIR159k, zma-MIR160g, zma-MIR164e, zma-MIR164f, zma-MIR164g, zma-MIR164h, zma-MIR166n, zma-MIR167j, zma-MIR169l, zma-MIR169m, zma-MIR169n, zma-MIR169o, zma-MIR169p, zma-MIR169q, zma-MIR169r, zma-MIR396e, zma-MIR396f, zma-MIR396g, zma-MIR396h, zma-MIR397a, zma-MIR397b, zma-MIR398a, zma-MIR398b, hvu-MIR156a, tae-MIR156, hvu-MIR159b, hvu-MIR159a, hvu-MIR166a, tae-MIR167b, hvu-MIR169, tae-MIR169, hvu-MIR397a, tae-MIR398, tae-MIR171b, hvu-MIR166b, hvu-MIR166c, osa-MIR2275c, osa-MIR2275d, tae-MIR1122b, tae-MIR9653a, tae-MIR9654a, tae-MIR9656, tae-MIR9657a, tae-MIR9659, tae-MIR9660, tae-MIR1127b, tae-MIR9661, tae-MIR396, tae-MIR9665, tae-MIR2275, tae-MIR9667, tae-MIR167c, tae-MIR1120b, tae-MIR397, tae-MIR1130b, tae-MIR5384, tae-MIR9675, tae-MIR1120c, tae-MIR9679, tae-MIR9657b, hvu-MIR397b, hvu-MIR156b, tae-MIR9653b
Of the 15 known miRNA families, 8 (miR396, miR168, miR156, miR172, miR159, miR398, miR1318 and miR167) showed different levels of preferential expression in wheat flag leaves, with the logarithm of the fold changes ranged from 0.5 to 5.2 as well as more than those in the developing seeds (Figure  3a, Table  2). [score:3]
In the present study, miR168, which targets an AGO-coding gene (Ta. [score:3]
The highest read abundance (approximately 238,000 RPM) was detected in the miR168 family and was 3.8 to 78 times more abundant than the other miRNA families, including miR156, miR166, miR167 and miR172, whose abundance ranged from about 2,900 RPM to 62,000 RPM (Table  2). [score:1]
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[+] score: 6
Other miRNAs from this paper: osa-MIR156a, osa-MIR156b, osa-MIR156c, osa-MIR156d, osa-MIR156e, osa-MIR156f, osa-MIR156g, osa-MIR156h, osa-MIR156i, osa-MIR156j, osa-MIR162a, osa-MIR164a, osa-MIR166a, osa-MIR166b, osa-MIR166c, osa-MIR166d, osa-MIR166e, osa-MIR166f, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR394, osa-MIR395b, osa-MIR395d, osa-MIR395e, osa-MIR395g, osa-MIR395h, osa-MIR395i, osa-MIR395j, osa-MIR395k, osa-MIR395l, osa-MIR395s, osa-MIR395t, osa-MIR395c, osa-MIR395a, osa-MIR395f, osa-MIR395u, osa-MIR396a, osa-MIR396b, osa-MIR396c, osa-MIR397a, osa-MIR397b, osa-MIR398a, osa-MIR398b, osa-MIR399a, osa-MIR399b, osa-MIR399c, osa-MIR399d, osa-MIR399e, osa-MIR399f, osa-MIR399g, osa-MIR399h, osa-MIR399i, osa-MIR399j, osa-MIR399k, osa-MIR156k, osa-MIR156l, osa-MIR159b, osa-MIR162b, osa-MIR166k, osa-MIR166l, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR168a, osa-MIR168b, osa-MIR172a, osa-MIR172b, osa-MIR172c, osa-MIR166g, osa-MIR166h, osa-MIR166i, osa-MIR408, osa-MIR172d, osa-MIR167j, osa-MIR166m, osa-MIR166j, osa-MIR437, osa-MIR396e, osa-MIR444a, osa-MIR528, osa-MIR529a, osa-MIR395m, osa-MIR395n, osa-MIR395o, osa-MIR395p, osa-MIR395q, osa-MIR395v, osa-MIR395w, osa-MIR395r, osa-MIR529b, tae-MIR159b, tae-MIR167a, tae-MIR399, tae-MIR408, tae-MIR444a, osa-MIR1432, osa-MIR444b, osa-MIR444c, osa-MIR444d, osa-MIR444e, osa-MIR444f, osa-MIR1848, osa-MIR1858a, osa-MIR1858b, osa-MIR1862a, osa-MIR1862b, osa-MIR1862c, osa-MIR1871, osa-MIR1862d, osa-MIR1862e, osa-MIR827, osa-MIR396f, osa-MIR396g, osa-MIR396h, osa-MIR396d, osa-MIR395x, osa-MIR395y, hvu-MIR156a, tae-MIR156, hvu-MIR159b, hvu-MIR166a, tae-MIR167b, tae-MIR395a, tae-MIR395b, hvu-MIR397a, tae-MIR398, tae-MIR444b, hvu-MIR166b, hvu-MIR444a, osa-MIR1862f, osa-MIR1862g, hvu-MIR399, hvu-MIR444b, hvu-MIR166c, tae-MIR396, tae-MIR167c, tae-MIR397, hvu-MIR397b, hvu-MIR156b
The extraordinarily high level of miR168 in monocots suggests strict regulation of the AGO1 mRNA [51]. [score:2]
It is known that miR168 regulates AGO1, which is involved in miRNA biogenesis. [score:2]
In Arabidopsis miR172 is the most abundant miRNA [53], while in barley miR172 is 30 times less abundant than miR168 (Additional file 1). [score:1]
miR168 was found to be the most abundant miRNA, accounting for about 6.7% of the total sequence reads (Additional file 1). [score:1]
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[+] score: 5
Conserved miRNAs also target genes involved in their own biogenesis and function: as an example miR168 targets AGO1 which is part of the RISC complex responsible for the miRNA -mediated mRNA cleavage [15]. [score:5]
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[+] score: 4
To determine whether the number of cloned sequences in the libraries reflects the relative abundance of a smRNA in planta, the accumulation of three known miRNA families (hvu-miR164, hvu-miR168 and hvu-miR390) was monitored during seed development (Figure 4). [score:2]
Oligonucleotide probes: miR164-AS (5’-TGCACGTGCCCTGCTTCTCCA-3’), miR168-AS (5’-GTCCCGATCTGCACCAAGCGA-3’), miR390-AS (5’-GGCGCTATCCCTCCTGAGCTT-3’), miR-MLA10-AS (5’-GGTCCATGATATGATGC[45]TTGA-3’), miR-GA3ox1-AS (5’-TCCACTGAGCTACAGGCGC-3’). [score:1]
The pot-miRNAs identified in this analysis included many homologs of known miRNA families that varied in sequence and length to previously identified sequences (e. g. 71 miR156 homologs and 24 miR168 homologs). [score:1]
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11
[+] score: 4
Other miRNAs from this paper: hvu-MIR156a, hvu-MIR444a, hvu-MIR156b
It is worth mentioning that the annotated hvu-miR168-3p sequence in the miRBase might be wrong, because firstly the annotated sequence does not form an overhang with the mature (hvu-MIR168-5p) sequence in the secondary structure, and secondly the theoretical mature* sequence coincides with the most expressed read that map to the 3p arm in both groups. [score:3]
hvu-miR156 was the most abundant miRNA in transgenic barley, accounting for 52.4% of the total reads, and the second most abundant in non-transgenic barley, while hvu-miR168-5p was the most abundant in non-transgenic barley, accounting for 71.3% of the total reads, and the second most abundant miRNA in transgenic barley (Table 4). [score:1]
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12
[+] score: 3
The miR167 and miR168 were the most frequently expressed miRNA in our study, with the 165,002 and 94,787 counts, respectively, while miR916, miR5510 and miR5522 were detected only once. [score:3]
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[+] score: 1
Other miRNAs from this paper: hvu-MIR156a, hvu-MIR171, hvu-MIR156b
miR168 was used as loading control. [score:1]
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