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5 publications mentioning hvu-MIR1120

Open access articles that are associated with the species Hordeum vulgare and mention the gene name MIR1120. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

1
[+] score: 21
Other miRNAs from this paper: osa-MIR156a, osa-MIR156b, osa-MIR156c, osa-MIR156d, osa-MIR156e, osa-MIR156f, osa-MIR156g, osa-MIR156h, osa-MIR156i, osa-MIR156j, osa-MIR166a, osa-MIR166b, osa-MIR166c, osa-MIR166d, osa-MIR166e, osa-MIR166f, osa-MIR171a, osa-MIR393a, osa-MIR397a, osa-MIR397b, osa-MIR156k, osa-MIR156l, osa-MIR159a, osa-MIR159b, osa-MIR159c, osa-MIR159d, osa-MIR159e, osa-MIR159f, osa-MIR319b, osa-MIR166k, osa-MIR166l, osa-MIR168a, osa-MIR168b, osa-MIR169f, osa-MIR171b, osa-MIR171c, osa-MIR171d, osa-MIR171e, osa-MIR171f, osa-MIR171g, osa-MIR172a, osa-MIR172b, osa-MIR172c, osa-MIR166g, osa-MIR166h, osa-MIR166i, osa-MIR171h, osa-MIR393b, osa-MIR172d, osa-MIR171i, osa-MIR166m, osa-MIR166j, zma-MIR156d, zma-MIR156f, zma-MIR156g, zma-MIR156b, zma-MIR156c, zma-MIR156e, zma-MIR156a, zma-MIR156h, zma-MIR156i, zma-MIR166a, zma-MIR166h, zma-MIR166e, zma-MIR166i, zma-MIR166f, zma-MIR166g, zma-MIR166b, zma-MIR166c, zma-MIR166d, zma-MIR171a, zma-MIR171b, zma-MIR172a, zma-MIR172d, zma-MIR172b, zma-MIR172c, zma-MIR171d, zma-MIR171f, zma-MIR156j, zma-MIR159a, zma-MIR159b, zma-MIR159c, zma-MIR159d, zma-MIR319b, zma-MIR166k, zma-MIR166j, zma-MIR168a, zma-MIR168b, zma-MIR169f, zma-MIR171c, zma-MIR171j, zma-MIR171e, zma-MIR171i, zma-MIR171g, zma-MIR172e, zma-MIR166l, zma-MIR166m, zma-MIR171k, zma-MIR171h, zma-MIR393a, zma-MIR156k, osa-MIR529a, tae-MIR159a, tae-MIR159b, tae-MIR171a, tae-MIR1120a, osa-MIR1430, zma-MIR156l, zma-MIR159e, zma-MIR159f, zma-MIR159g, zma-MIR159h, zma-MIR159i, zma-MIR159j, zma-MIR159k, zma-MIR166n, zma-MIR171l, zma-MIR171m, zma-MIR171n, zma-MIR393b, zma-MIR393c, zma-MIR397a, zma-MIR397b, hvu-MIR156a, tae-MIR156, hvu-MIR159b, hvu-MIR159a, hvu-MIR166a, hvu-MIR168, hvu-MIR171, hvu-MIR397a, tae-MIR171b, hvu-MIR166b, osa-MIR3981, hvu-MIR166c, tae-MIR1120b, tae-MIR397, tae-MIR1120c, hvu-MIR397b, hvu-MIR156b
The expression level of the mRNA/pri-miR1120 was almost equal in all developmental stages tested (Figure 8D). [score:4]
However, the level of the mature miR1120 varies during development with the lowest amount in 2-week- and 68-day-old plants (Figure 8E). [score:2]
This suggests the presence of the posttranscriptional mechanisms regulating the miR1120 biogenesis. [score:2]
Is miRNA1120, located in the 3′ UTR of a putative protein encoding gene, a functional microRNA?. [score:1]
Detection of pri-, pre- and mature miR1120. [score:1]
Sequences corresponding to the mature miR1120 and miR1120* were located downstream of the stop codon in the 3 [′] UTR (Table 1). [score:1]
miRNA1120 was located in the 3 [′] UTR of a protein coding gene. [score:1]
The pre-miR1120 detected by Northern blot is about 80 nt long and might correspond to the stem-loop structure predicted for pre-miR1120. [score:1]
The sequence and structure of the barley pre-miR1120 precursor show high similarity to its only known wheat orthologue pre-miR1120 (Figure 8B). [score:1]
Our finding raises the question whether miR1120 is a true miRNA molecule or it represents a small noncoding RNA such as a siRNA, especially considering its size of 24 nucleotides. [score:1]
We suggest that miR1120, located within the 3 [′] UTR of a protein-coding gene and described as a functional miRNA in wheat, may represent a siRNA generated from a mariner-like transposable element. [score:1]
The following thermal profile parameters were used: 10 min at 90°C, 45 cycles (or 40 cycles for pri-miRNA159b, pri-miRNA166n, pri-miRNA1126 and pri-miRNA1120) of 15 s at 95°C, and 1 min at 60°C. [score:1]
Interestingly, two introns in the putative protein/ MIR1120 gene (introns 3 and 5) carry the signatures of U12-type introns, with GU-AG dinucleotides at the 5 [′] and 3 [′] intron ends, and the classic U12 branch point site (UUUCCUCAA) [66, 67]. [score:1]
Unexpectedly, we found an 85 nt long region which included miR1120/miR1120* and displayed almost 80% sequence similarity to the short transposon element DNA/TcMar-Stowaway [69]. [score:1]
Figure 8 Schematic representation of the MIR1120 gene and its precursor. [score:1]
For mRNA/pri-miR1120 transcripts, we were able to detect only the fully spliced RNA, which is probably due to rapid and efficient splicing of all introns from the primary transcript (Figure 8C). [score:1]
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2
[+] score: 16
The targets of miR159 and miR1120 were found to be up-regulated in both root and leaf upon boron stress, but miR395 and miR5048 target genes were down-regulated in root but remained at the same levels in leaf tissue upon boron stress. [score:11]
Although miR168 was induced, miR159, miR396, miR1120 and miR5048 were inhibited in both root and leaf upon excess boron exposure. [score:3]
Contig2_All MADS-box transcription factor hvu-miR1120 – – – CL58. [score:1]
Both conserved barley miRNAs (miR156, miR159, miR164, miR166, miR168, miR171, miR395 and miR396) and non-conserved barley miRNAs (miR1120 and miR5048) were detected. [score:1]
[1 to 20 of 4 sentences]
3
[+] score: 3
Most of the novel miRNA/target pairs refer to miRNAs recently discovered and thus probably less studied (i. e. miR1120, miR1122, miR1134). [score:3]
[1 to 20 of 1 sentences]
4
[+] score: 3
They observed that miR159, miR160, miR164, miR399, miR1117, and miR1120 exhibited differential expression suggesting a role in N homeostasis (Sinha et al. 2015) (Table 3). [score:3]
[1 to 20 of 1 sentences]
5
[+] score: 2
Hvu-miR1120b (21 nt) is a short version of hvu-miR1120 (24 nt) with 3 nucleotides missing at the 5’ end; both are predicted to originate from the same pri-miRNA. [score:1]
Since hvu-miR1120 was only predicted in silico[51] and hasn’t been detected in barley leaves, it may not exist in planta. [score:1]
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