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4 publications mentioning sly-MIR5300

Open access articles that are associated with the species Solanum lycopersicum and mention the gene name MIR5300. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

1
[+] score: 37
The expression profiles of the B. cinerea-responsive miRNA targetsCleaveLand pipeline was performed to predict the targets of the seven known B. cinerea-responsive miRNAs (miR159, miR160, miR169, miR319, miR394, miR1919, and miR5300), thereby detecting the expression profiles of their target genes. [score:11]
Seven families, miR159, miR169, miR319, miR394, miR1919, miR1446, and miR5300, were upregulated and only 1 family, miR2111, was downregulated in B. cinerea-infected leaves. [score:7]
CleaveLand pipeline was performed to predict the targets of the seven known B. cinerea-responsive miRNAs (miR159, miR160, miR169, miR319, miR394, miR1919, and miR5300), thereby detecting the expression profiles of their target genes. [score:7]
miR160 and miR5300, were downregulated; however, no significant differential expression in B. cinerea-inoculated leaves was observed for miR156 (Figure  5). [score:6]
We examined the expression patterns by subjecting 9 B. cinerea-responsive miRNAs, including 8 known miRNAs (miR156, miR159, miR160, miR169, miR319, miR394, miR1919, and miR5300) and 1 novel miRNA (miRn1), to quantitative reverse-transcription PCR (qRT-PCR) (Figure  5). [score:3]
Moreover, no CDS was predicted as a target of the remaining three miRNAs, namely miR169, miR1919, and miR5300. [score:3]
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2
[+] score: 11
org): miR156, miR156c, miR156kj and miR157d: Squamosa-promoter Binding Protein (SBP)-like transcription factors; miR166glmf: HD-Zip transcription factors, including Phabulosa (PHB) and Phavoluta (PHV) that regulate axillary meristem initiation and leaf development; miR167b, miR167d and miR167fijeghac: Auxin Response Factors (ARF transcription factors); miR396abcd: Growth Regulating Factor (GRF) transcription factors, rhodenase-like proteins, and kinesin-like protein B; miR394ab, F-box proteins; miR827abc: Unknown; miR403bdf: Virus defense; miR162 and miR162abc: Unknown; miR530: Unknown; miR398abc: copper superoxide dismutases and cytochrome C oxidase subunit V; miR482f: NB domain proteins; miR5300, Unknown. [score:4]
However, regulation of predicted target genes by miR5300 has not yet been reported [25]. [score:4]
In contrast to the other regulated miRNAs, functions for miR5300 have not been previously reported in any plant species, including tomato. [score:2]
miR5300 was first identified as a novel tomato miRNA [24] and later classified as a member of the miR482/2118 superfamily [23]. [score:1]
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3
[+] score: 8
Some targets of miRNAs have been documented to be involved in plant disease resistance, such as the targets of sly-miR477-3p, sly-miR5300 and sly-miR6024 (Additional file 10: Table S10). [score:7]
Noticeably, some conserved miRNAs were firstly identified in our study to be drought-responsive in tomato, such as sly-miR1919, sly-miR5300 and sly-miR9477. [score:1]
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4
[+] score: 3
Other miRNAs, such as miR482, miR6019, miR6020, miR6022, miR5300, miR1507, and others, are thought to suppress nucleotide -binding site and leucine-rich repeat (NBS– LRR) defense genes, which play critical roles in effector-triggered immunity (ETI), also a crucial component of plant immune system 29– 33. [score:3]
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