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3 publications mentioning ppe-MIR828

Open access articles that are associated with the species Prunus persica and mention the gene name MIR828. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

1
[+] score: 88
Thus the observed distinct expression patterns of miR828 and miR858 among various tissues and fruit developmental stages would modulate the co -targeted MYB expression in an exquisite spatio-temporal manner, to precisely regulate the co-ordination of lignification in stone and mesocarp- and ectocarp-specific fruit coloring during peach fruit development and ripening. [score:10]
While we were only able to detect miR828 expression during fruit development (Figure 2b), we cannot rule out the potential roles of miR858 and miR159 since they could be highly cell- or tissue-, or stage-specific during fruit development, and their expression window period might be missed in this study. [score:7]
Further analysis revealed that miR828 and miR858 target sites were separated by 12 nucleotides and co-located in the conserved region of the third exon while the miR159 target site was located in the divergent region of the co -targeted MYBs (Figure 5b). [score:7]
The finding that miR858 shares five MYB targets with miR828 and two with miR159, respectively, and three miR828 -targeted MYBs undergo siRNA biogenesis supports the notion of the evolution of a miRNA- and siRNA -mediated silencing reinforcement regulatory mechanism in peach. [score:6]
Thus, miR828, TAS4 TAS4-siRNA(−81) and the targeted MYBs could form a similar feedback regulatory circle that control anthocyanin accumulation and possibly fruit coloration during peach fruit ripening, which is further supported by the observation of detectable miR828 expression in the mature but not the young fruit (Figure 2b). [score:6]
MiR828 could cleave three MYB genes while miR858 targeted 18, among which they shared one common target. [score:5]
In addition, we found that miR159, miR828 and miR858 collectively target 49 MYBs, 19 of which are known to regulate phenylpropanoid metabolism, a key pathway involved in stone hardening and fruit color development. [score:5]
Therefore, we performed in silico target prediction and identified an additional three, nine and 24 MYB genes for miR159, miR828 and miR858, respectively, with an align score of less than 5. Thus, a total of 49 MYB target genes were found, four for miR159, 12 for miR828 and 40 for miR858. [score:5]
All the peach MYB targets for miR828, miR858, and miR159 were predicted by Targetfinder 1.6 with an align-score of no more than 5. Amino acid sequences of MYB factors in Arabidopsis were retrieved from TAIR (http://www. [score:5]
In peach, at least 49 MYBs can be potentially targeted by miR159, miR828 and miR858 (Figure 5a). [score:3]
Both miR828 and miR858 targeted MYB family genes. [score:3]
The tissue-specific expression patterns were presented for the conserved miRNAs, miR160, miR167, miR169, miR319, miR390 and miR396, and the less-conserved miRNAs, miR828, miR858 and miR2118 (Figure 2b). [score:3]
Still, the potential regulatory roles of miR858, miR159 and miR828 in lignin, cell wall and flavonoid metabolism and synthesis pathways provides evidence for a significant role of sRNA in coordinating fruit development. [score:3]
showed that both miR390 and miR828 had detectable expression in various peach tissues (Figure 2b). [score:3]
Twelve miR828 -targeted MYBs grouped into five subgroups, i. e. S4, S5, S6, S7 - anthocyanin biosynthesis and S15 - trichome initiation (Figure 5e). [score:3]
In Arabidopsis, miR159, miR828 and miR858 target at least 13 MYB genes [39]. [score:3]
MiR858 shared five targeted MYBs with miR828 and two with miR159 (Figure 5a). [score:3]
The induction of AtMYB75 along with anthocyanin accumulation activates miR828, TAS4 and TAS4-siRNA(−81) [37]. [score:1]
These three MYB transcripts shared similar miR828 cleavage positions, tasiRNA generation regions and patterns, intron-exon structure and sequence conservation (Figure 5b). [score:1]
Together, these data indicate that both miR390- TAS3 and miR828- TAS4 biogenesis pathways and functions are at least partially conserved in peach. [score:1]
Its transcript bore a miR828 signature binding site at the 5' end with a similar siRNA biogenesis pattern (Figure 4b) and PpTAS4 siRNA was preferentially produced in the leaf and flower (Figure 4b). [score:1]
Furthermore, we found that the miR828-cleaved transcripts of three MYBs underwent phased 21-nt siRNA biogenesis production (Figure 5c). [score:1]
In this study, we found that both miR390- TAS3 and miR828- TAS4 tasiRNA pathways are conserved in peach as evidenced by the identification of miR390 and miR828, TAS3 and TAS4 transcripts and the generation of phased 21-nt siRNAs along both TAS3 and TAS4 transcripts (Figure 4a,b). [score:1]
Further, both miR390- TAS3 and miR828- TAS4 siRNA biogenesis pathways and their functions appear to be conserved in peach; miR828 cleavage is capable of activating siRNA biogenesis in PpTAS4 and three MYB protein-coding transcripts, indicating a silencing reinforcement in peach. [score:1]
Trans-acting siRNAs in peachIn this study, we found that both miR390- TAS3 and miR828- TAS4 tasiRNA pathways are conserved in peach as evidenced by the identification of miR390 and miR828, TAS3 and TAS4 transcripts and the generation of phased 21-nt siRNAs along both TAS3 and TAS4 transcripts (Figure 4a,b). [score:1]
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2
[+] score: 4
Other miRNAs from this paper: ppe-MIR171f, ppe-MIR394a, ppe-MIR171h, ppe-MIR171a, ppe-MIR171e, ppe-MIR171g, ppe-MIR171b, ppe-MIR171c, mdm-MIR156a, mdm-MIR156b, mdm-MIR156c, mdm-MIR156d, mdm-MIR156e, mdm-MIR156f, mdm-MIR156g, mdm-MIR156h, mdm-MIR156i, mdm-MIR156j, mdm-MIR156k, mdm-MIR156l, mdm-MIR156m, mdm-MIR156n, mdm-MIR156o, mdm-MIR156p, mdm-MIR156q, mdm-MIR156r, mdm-MIR156s, mdm-MIR156t, mdm-MIR156u, mdm-MIR156v, mdm-MIR156w, mdm-MIR156x, mdm-MIR156y, mdm-MIR156z, mdm-MIR156aa, mdm-MIR156ab, mdm-MIR156ac, mdm-MIR156ad, mdm-MIR156ae, mdm-MIR159a, mdm-MIR159b, mdm-MIR160a, mdm-MIR160b, mdm-MIR160c, mdm-MIR160d, mdm-MIR160e, mdm-MIR164a, mdm-MIR164b, mdm-MIR164c, mdm-MIR164d, mdm-MIR164e, mdm-MIR164f, mdm-MIR166i, mdm-MIR167a, mdm-MIR167b, mdm-MIR167c, mdm-MIR167d, mdm-MIR167e, mdm-MIR167f, mdm-MIR167g, mdm-MIR167h, mdm-MIR167i, mdm-MIR167j, mdm-MIR171a, mdm-MIR171b, mdm-MIR171c, mdm-MIR171d, mdm-MIR171e, mdm-MIR171f, mdm-MIR171g, mdm-MIR171h, mdm-MIR171i, mdm-MIR171j, mdm-MIR171k, mdm-MIR171l, mdm-MIR171m, mdm-MIR171n, mdm-MIR172a, mdm-MIR172b, mdm-MIR172c, mdm-MIR172d, mdm-MIR172e, mdm-MIR172f, mdm-MIR172g, mdm-MIR172h, mdm-MIR172i, mdm-MIR172j, mdm-MIR172k, mdm-MIR172l, mdm-MIR172m, mdm-MIR172n, mdm-MIR172o, mdm-MIR394a, mdm-MIR394b, mdm-MIR396e, mdm-MIR828a, mdm-MIR828b, mdm-MIR159c, mdm-MIR171o, mdm-MIR858, ppe-MIR156a, ppe-MIR156b, ppe-MIR156c, ppe-MIR156d, ppe-MIR156e, ppe-MIR156f, ppe-MIR156g, ppe-MIR156h, ppe-MIR156i, ppe-MIR159, ppe-MIR160a, ppe-MIR160b, ppe-MIR164a, ppe-MIR164b, ppe-MIR164c, ppe-MIR164d, ppe-MIR167a, ppe-MIR167b, ppe-MIR167c, ppe-MIR167d, ppe-MIR171d, ppe-MIR172a, ppe-MIR172b, ppe-MIR172c, ppe-MIR172d, ppe-MIR394b, ppe-MIR858, mdm-MIR159d, mdm-MIR159e, mdm-MIR159f, mdm-MIR171p, mdm-MIR171q, mdm-MIR172p
In addition, miR828, and miR858, which are also involved in R2R3-MYB regulation[72] was predicted target MYB genes in Rosa (Additional file 2). [score:4]
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3
[+] score: 4
Other miRNAs from this paper: osa-MIR156a, osa-MIR156b, osa-MIR156c, osa-MIR156d, osa-MIR156e, osa-MIR156f, osa-MIR156g, osa-MIR156h, osa-MIR156i, osa-MIR156j, osa-MIR160a, osa-MIR160b, osa-MIR160c, osa-MIR160d, osa-MIR162a, osa-MIR164a, osa-MIR164b, osa-MIR166a, osa-MIR166b, osa-MIR166c, osa-MIR166d, osa-MIR166e, osa-MIR166f, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR169a, osa-MIR171a, osa-MIR393a, osa-MIR394, osa-MIR396a, osa-MIR396b, osa-MIR396c, osa-MIR397a, osa-MIR397b, osa-MIR399a, osa-MIR399b, osa-MIR399c, osa-MIR399d, osa-MIR399e, osa-MIR399f, osa-MIR399g, osa-MIR399h, osa-MIR399i, osa-MIR399j, osa-MIR399k, osa-MIR156k, osa-MIR156l, osa-MIR159a, osa-MIR159b, osa-MIR159c, osa-MIR159d, osa-MIR159e, osa-MIR159f, osa-MIR319a, osa-MIR319b, osa-MIR160e, osa-MIR160f, osa-MIR162b, osa-MIR164c, osa-MIR164d, osa-MIR164e, osa-MIR166k, osa-MIR166l, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR168a, osa-MIR168b, osa-MIR169b, osa-MIR169c, osa-MIR169d, osa-MIR169e, osa-MIR169f, osa-MIR169g, osa-MIR169h, osa-MIR169i, osa-MIR169j, osa-MIR169k, osa-MIR169l, osa-MIR169m, osa-MIR169n, osa-MIR169o, osa-MIR169p, osa-MIR169q, osa-MIR171b, osa-MIR171c, osa-MIR171d, osa-MIR171e, osa-MIR171f, osa-MIR171g, osa-MIR172a, osa-MIR172b, osa-MIR172c, osa-MIR166g, osa-MIR166h, osa-MIR166i, osa-MIR171h, osa-MIR393b, osa-MIR172d, osa-MIR171i, osa-MIR167j, osa-MIR166m, osa-MIR166j, osa-MIR164f, osa-MIR390, osa-MIR396e, osa-MIR528, osa-MIR169r, osa-MIR827, osa-MIR396f, osa-MIR396g, osa-MIR396h, osa-MIR396d, osa-MIR5083, ppe-MIR171f, ppe-MIR394a, ppe-MIR171h, ppe-MIR171a, ppe-MIR171e, ppe-MIR169e, ppe-MIR319a, ppe-MIR319b, ppe-MIR171g, ppe-MIR171b, ppe-MIR171c, ppe-MIR156a, ppe-MIR156b, ppe-MIR156c, ppe-MIR156d, ppe-MIR156e, ppe-MIR156f, ppe-MIR156g, ppe-MIR156h, ppe-MIR156i, ppe-MIR159, ppe-MIR160a, ppe-MIR160b, ppe-MIR162, ppe-MIR164a, ppe-MIR164b, ppe-MIR164c, ppe-MIR164d, ppe-MIR166a, ppe-MIR166b, ppe-MIR166c, ppe-MIR166d, ppe-MIR166e, ppe-MIR167a, ppe-MIR167b, ppe-MIR167c, ppe-MIR167d, ppe-MIR168, ppe-MIR169a, ppe-MIR169b, ppe-MIR169c, ppe-MIR169d, ppe-MIR169f, ppe-MIR169g, ppe-MIR169h, ppe-MIR169i, ppe-MIR169j, ppe-MIR169k, ppe-MIR169l, ppe-MIR171d, ppe-MIR172a, ppe-MIR172b, ppe-MIR172c, ppe-MIR172d, ppe-MIR390, ppe-MIR393a, ppe-MIR393b, ppe-MIR394b, ppe-MIR396a, ppe-MIR396b, ppe-MIR397, ppe-MIR399a, ppe-MIR399b, ppe-MIR399c, ppe-MIR399d, ppe-MIR399e, ppe-MIR399f, ppe-MIR399g, ppe-MIR399h, ppe-MIR399i, ppe-MIR399j, ppe-MIR399k, ppe-MIR399l, ppe-MIR399m, ppe-MIR399n, ppe-MIR403, ppe-MIR827, ppe-MIR858
However, the expression of five miRNA families (miR828, miR858, miR4376, miR4495 and miR5083) showed the lowest abundance, with only one read (Fig. 2B). [score:3]
Furthermore, miR403 and miR828 was only found in dicots, whereas miR528 was only identified in monocots. [score:1]
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