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6 publications mentioning mes-MIR164b

Open access articles that are associated with the species Manihot esculenta and mention the gene name MIR164b. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

1
[+] score: 37
By analyzing the expression of lincRNAs candidates and miRNAs targets, two of these cold and/or drought stress-related lincRNAs (linRNA159 and 340) were predicted to be target mimics of miR164 and miR169, respectively. [score:7]
Considering the coordinate expression pattern of linRNAs and miR164/169 targets, it is intriguing to associate these two lincRNAs with the important functions of miR164/miR169 in regulating cold and/or drought stress responses. [score:6]
We found miR164 was significantly up-regulated by cold and drought stress, especially after cold treatment, while miR169 and miR2275 exhibited decreased expression pattern during all stress conditions (Fig. 5F). [score:6]
It has been reported that a decrease in miR164 -targeted NAC genes cause drought tolerance in plant and that miR169 -targeted NF-Y genes also plays a role in abiotic stress responses 47 48. [score:5]
For example, we found a cold-repressive lincRNA159, binding miRNA164 with three mismatches, coordinated with decrease of the expression of miR164 -targeted NAC (NAM, ATAF1/2, CUC2) genes under cold treatment (Fig. 5B). [score:5]
To further understand the relationship of miRNA target mimics and correlated miRNAs, we analyzed the expression level of miR164, miR169 and miR2275 under stress conditions by qRT-PCR, respectively. [score:5]
It is known that miR164 and miR169 participate in regulating cold and/or drought stress responses in plants 47 48. [score:2]
In total, we found that 16 of the identified lncRNAs that may act as miRNA mimics bound by conserved miRNAs, such as miR164, miR169, miR2275 and miR1446 (Fig. 5A, Supplemental Data S4). [score:1]
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2
[+] score: 18
In the current study, plant miRNAs from conserved and highly expressed families (e. g miR156, miR160, miR164, miR166, miR169 and miR171) were shown to have potential targets in the genomes of two begomoviruses. [score:5]
Interestingly, in this study the miR156, miR159, miR160, miR164, miR169, miR170, miR171, miR395 and miR395 were predicted and their expression was detected, which also were found in Jatropha, cassava, Ricinus communis and Hevea brasiliensis in response to abiotic stress, development, transcription factors and metabolism [82]– [87]. [score:4]
The family miR164 (a, c, d) was found to be targeting the same position, in a single nucleotide. [score:3]
Induction of disease symptoms after infection of plants with ACMV has been attributed to the accumulation of miR159 and miR164 [98]. [score:3]
MiR164a, miR164c and miR164d (Table S10 in File S1) with a score of 1.5, all located in the NAC domain [Genbank: GT978826], a validated target for miR164 [60]. [score:3]
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3
[+] score: 15
However, not all target genes displayed lower expression upon stress treatment; chitinase A targeted by miR160, L-aspartate oxidase targeted by miR828, and an auxin-response family protein targeted by miR164 were among the genes with the largest increase in expression in the conserved set (see Supplementary file 1). [score:13]
An interesting example of a miRNA with potential roles in the stress response in cassava is miR164 which was predicted to regulate a NAC domain containing protein. [score:2]
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4
[+] score: 8
Other miRNAs from this paper: mes-MIR159a, mes-MIR167a, mes-MIR168a, mes-MIR171a, mes-MIR172a, mes-MIR394a, mes-MIR399a, mes-MIR156a, mes-MIR156b, mes-MIR156c, mes-MIR156d, mes-MIR156e, mes-MIR156f, mes-MIR156g, mes-MIR156h, mes-MIR156i, mes-MIR156j, mes-MIR156k, mes-MIR159b, mes-MIR159c, mes-MIR159d, mes-MIR160a, mes-MIR160b, mes-MIR160c, mes-MIR160d, mes-MIR160e, mes-MIR160f, mes-MIR160g, mes-MIR160h, mes-MIR162, mes-MIR164a, mes-MIR164c, mes-MIR164d, mes-MIR166a, mes-MIR166b, mes-MIR166c, mes-MIR166d, mes-MIR166e, mes-MIR166f, mes-MIR166g, mes-MIR166h, mes-MIR166i, mes-MIR166j, mes-MIR167b, mes-MIR167c, mes-MIR167d, mes-MIR167e, mes-MIR167f, mes-MIR167g, mes-MIR167h, mes-MIR169a, mes-MIR169b, mes-MIR169c, mes-MIR169d, mes-MIR169e, mes-MIR169f, mes-MIR169g, mes-MIR169h, mes-MIR169i, mes-MIR169j, mes-MIR169k, mes-MIR169l, mes-MIR169m, mes-MIR169n, mes-MIR169o, mes-MIR169p, mes-MIR169q, mes-MIR169r, mes-MIR169s, mes-MIR169t, mes-MIR169u, mes-MIR169v, mes-MIR169w, mes-MIR169x, mes-MIR169y, mes-MIR169z, mes-MIR169aa, mes-MIR169ab, mes-MIR169ac, mes-MIR171b, mes-MIR171c, mes-MIR171d, mes-MIR171e, mes-MIR171f, mes-MIR171g, mes-MIR171h, mes-MIR171i, mes-MIR171j, mes-MIR171k, mes-MIR172b, mes-MIR172c, mes-MIR172d, mes-MIR172e, mes-MIR172f, mes-MIR319a, mes-MIR319b, mes-MIR319c, mes-MIR319d, mes-MIR319e, mes-MIR319f, mes-MIR319g, mes-MIR319h, mes-MIR394b, mes-MIR394c, mes-MIR396a, mes-MIR396b, mes-MIR396c, mes-MIR396d, mes-MIR396e, mes-MIR396f, mes-MIR397, mes-MIR399b, mes-MIR399c, mes-MIR399d, mes-MIR399e, mes-MIR399f, mes-MIR399g, mes-MIR477h, mes-MIR477i, mes-MIR477a, mes-MIR477b, mes-MIR477c, mes-MIR477d, mes-MIR477e, mes-MIR477f, mes-MIR477g, mes-MIR535a, mes-MIR535b, mes-MIR2950, mes-MIR171l, mes-MIR398, mes-MIR399h, mes-MIR477j, mes-MIR477k, mes-MIR535c, mes-MIR535d, mes-MIR169ad
Many of these targets encode transcription factors; for example, they include the SPL (target of miR156 and miR535), MYB (miR159, miR319 and new-18), HAM3 (miR171), NAC (miR164), ARF (miR160, miR167 and miR169), TCP (miR319), GRF (miR396 and miR477) and SIGMA (new-11) genes. [score:5]
Several miRNAs are involved in starch accumulation in rice [6], and five of them (miR159, miR160, miR164, miR167 and miR319) also had the same targets in cassava. [score:3]
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5
[+] score: 4
Other miRNAs from this paper: mes-MIR159a, mes-MIR167a, mes-MIR168a, mes-MIR171a, mes-MIR172a, mes-MIR399a, mes-MIR408, mes-MIR156a, mes-MIR156b, mes-MIR156c, mes-MIR156d, mes-MIR156e, mes-MIR156f, mes-MIR156g, mes-MIR156h, mes-MIR156i, mes-MIR156j, mes-MIR156k, mes-MIR159b, mes-MIR159c, mes-MIR159d, mes-MIR160a, mes-MIR160b, mes-MIR160c, mes-MIR160d, mes-MIR160e, mes-MIR160f, mes-MIR160g, mes-MIR160h, mes-MIR162, mes-MIR164a, mes-MIR164c, mes-MIR164d, mes-MIR166a, mes-MIR166b, mes-MIR166c, mes-MIR166d, mes-MIR166e, mes-MIR166f, mes-MIR166g, mes-MIR166h, mes-MIR166i, mes-MIR166j, mes-MIR167b, mes-MIR167c, mes-MIR167d, mes-MIR167e, mes-MIR167f, mes-MIR167g, mes-MIR167h, mes-MIR169a, mes-MIR169b, mes-MIR169c, mes-MIR169d, mes-MIR169e, mes-MIR169f, mes-MIR169g, mes-MIR169h, mes-MIR169i, mes-MIR169j, mes-MIR169k, mes-MIR169l, mes-MIR169m, mes-MIR169n, mes-MIR169o, mes-MIR169p, mes-MIR169q, mes-MIR169r, mes-MIR169s, mes-MIR169t, mes-MIR169u, mes-MIR169v, mes-MIR169w, mes-MIR169x, mes-MIR169y, mes-MIR169z, mes-MIR169aa, mes-MIR169ab, mes-MIR169ac, mes-MIR171b, mes-MIR171c, mes-MIR171d, mes-MIR171e, mes-MIR171f, mes-MIR171g, mes-MIR171h, mes-MIR171i, mes-MIR171j, mes-MIR171k, mes-MIR172b, mes-MIR172c, mes-MIR172d, mes-MIR172e, mes-MIR172f, mes-MIR319a, mes-MIR319b, mes-MIR319c, mes-MIR319d, mes-MIR319e, mes-MIR319f, mes-MIR319g, mes-MIR319h, mes-MIR390, mes-MIR393a, mes-MIR393b, mes-MIR393c, mes-MIR393d, mes-MIR395a, mes-MIR395b, mes-MIR395c, mes-MIR395d, mes-MIR395e, mes-MIR396a, mes-MIR396b, mes-MIR396c, mes-MIR396d, mes-MIR396e, mes-MIR396f, mes-MIR397, mes-MIR399b, mes-MIR399c, mes-MIR399d, mes-MIR399e, mes-MIR399f, mes-MIR399g, mes-MIR482, mes-MIR535a, mes-MIR535b, mes-MIR827, mes-MIR2275, mes-MIR171l, mes-MIR398, mes-MIR399h, mes-MIR2118, mes-MIR535c, mes-MIR535d, mes-MIR169ad
Twenty-one miRNA families (miR156, miR159, miR160, miR162, miR164, miR166-169, miR171, miR172, miR319, miR390, miR393-399, and miR408) seem to be universally expressed among diverse plant species (Fig 8). [score:3]
Ten families (miR162, miR164, miR167, miR168, miR169, miR172, miR393, miR399 and miR827) are present in all angiosperm lineages (Fig 8). [score:1]
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6
[+] score: 1
Other miRNAs from this paper: rco-MIR156a, rco-MIR156b, rco-MIR156c, rco-MIR156d, rco-MIR156e, rco-MIR156f, rco-MIR156g, rco-MIR156h, rco-MIR159, rco-MIR160a, rco-MIR160b, rco-MIR162, rco-MIR164a, rco-MIR164b, rco-MIR164c, rco-MIR164d, rco-MIR166a, rco-MIR166b, rco-MIR166c, rco-MIR166d, rco-MIR166e, rco-MIR167a, rco-MIR167b, rco-MIR167c, rco-MIR168, rco-MIR169a, rco-MIR169b, rco-MIR169c, rco-MIR171a, rco-MIR171b, rco-MIR171c, rco-MIR171d, rco-MIR171e, rco-MIR171f, rco-MIR171g, rco-MIR172, rco-MIR319a, rco-MIR319b, rco-MIR319c, rco-MIR319d, rco-MIR390a, rco-MIR390b, rco-MIR393, rco-MIR395a, rco-MIR395b, rco-MIR395c, rco-MIR395d, rco-MIR395e, rco-MIR396, rco-MIR398a, rco-MIR398b, rco-MIR399a, rco-MIR399b, rco-MIR399c, rco-MIR399d, rco-MIR399e, rco-MIR399f, rco-MIR408, rco-MIR160c, mes-MIR159a, mes-MIR167a, mes-MIR168a, mes-MIR171a, mes-MIR172a, mes-MIR399a, mes-MIR408, mes-MIR156a, mes-MIR156b, mes-MIR156c, mes-MIR156d, mes-MIR156e, mes-MIR156f, mes-MIR156g, mes-MIR156h, mes-MIR156i, mes-MIR156j, mes-MIR156k, mes-MIR159b, mes-MIR159c, mes-MIR159d, mes-MIR160a, mes-MIR160b, mes-MIR160c, mes-MIR160d, mes-MIR160e, mes-MIR160f, mes-MIR160g, mes-MIR160h, mes-MIR162, mes-MIR164a, mes-MIR164c, mes-MIR164d, mes-MIR166a, mes-MIR166b, mes-MIR166c, mes-MIR166d, mes-MIR166e, mes-MIR166f, mes-MIR166g, mes-MIR166h, mes-MIR166i, mes-MIR166j, mes-MIR167b, mes-MIR167c, mes-MIR167d, mes-MIR167e, mes-MIR167f, mes-MIR167g, mes-MIR167h, mes-MIR169a, mes-MIR169b, mes-MIR169c, mes-MIR169d, mes-MIR169e, mes-MIR169f, mes-MIR169g, mes-MIR169h, mes-MIR169i, mes-MIR169j, mes-MIR169k, mes-MIR169l, mes-MIR169m, mes-MIR169n, mes-MIR169o, mes-MIR169p, mes-MIR169q, mes-MIR169r, mes-MIR169s, mes-MIR169t, mes-MIR169u, mes-MIR169v, mes-MIR169w, mes-MIR169x, mes-MIR169y, mes-MIR169z, mes-MIR169aa, mes-MIR169ab, mes-MIR169ac, mes-MIR171b, mes-MIR171c, mes-MIR171d, mes-MIR171e, mes-MIR171f, mes-MIR171g, mes-MIR171h, mes-MIR171i, mes-MIR171j, mes-MIR171k, mes-MIR172b, mes-MIR172c, mes-MIR172d, mes-MIR172e, mes-MIR172f, mes-MIR319a, mes-MIR319b, mes-MIR319c, mes-MIR319d, mes-MIR319e, mes-MIR319f, mes-MIR319g, mes-MIR319h, mes-MIR390, mes-MIR393a, mes-MIR393b, mes-MIR393c, mes-MIR393d, mes-MIR395a, mes-MIR395b, mes-MIR395c, mes-MIR395d, mes-MIR395e, mes-MIR396a, mes-MIR396b, mes-MIR396c, mes-MIR396d, mes-MIR396e, mes-MIR396f, mes-MIR399b, mes-MIR399c, mes-MIR399d, mes-MIR399e, mes-MIR399f, mes-MIR399g, mes-MIR477h, mes-MIR477i, mes-MIR477a, mes-MIR477b, mes-MIR477c, mes-MIR477d, mes-MIR477e, mes-MIR477f, mes-MIR477g, mes-MIR482, mes-MIR828a, mes-MIR828b, mes-MIR171l, mes-MIR398, mes-MIR399h, mes-MIR477j, mes-MIR477k, mes-MIR2118, mes-MIR3627, mes-MIR169ad
Another 10 annotated miRNA families – miR159, miR162, miR164, miR167, miR168, miR169, miR172, miR393, miR396, and miR398 – were also conserved in at least eight species (Table  2). [score:1]
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