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3 publications mentioning ppe-MIR858

Open access articles that are associated with the species Prunus persica and mention the gene name MIR858. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

1
[+] score: 88
Thus the observed distinct expression patterns of miR828 and miR858 among various tissues and fruit developmental stages would modulate the co -targeted MYB expression in an exquisite spatio-temporal manner, to precisely regulate the co-ordination of lignification in stone and mesocarp- and ectocarp-specific fruit coloring during peach fruit development and ripening. [score:10]
Accordingly, we did a phylogenetic analysis for all the miRNA -targeted peach MYB genes and found that of the four miR159 -targeted MYBs, one was in MYB subgroup 18 - anther and pollen development; another co -targeted by miR858 in subgroup 13 - lignin deposition, mucilage production and stomatal aperture [39], and the remaining two were ungrouped. [score:8]
Further analysis revealed that miR828 and miR858 target sites were separated by 12 nucleotides and co-located in the conserved region of the third exon while the miR159 target site was located in the divergent region of the co -targeted MYBs (Figure 5b). [score:7]
While we were only able to detect miR828 expression during fruit development (Figure 2b), we cannot rule out the potential roles of miR858 and miR159 since they could be highly cell- or tissue-, or stage-specific during fruit development, and their expression window period might be missed in this study. [score:7]
The finding that miR858 shares five MYB targets with miR828 and two with miR159, respectively, and three miR828 -targeted MYBs undergo siRNA biogenesis supports the notion of the evolution of a miRNA- and siRNA -mediated silencing reinforcement regulatory mechanism in peach. [score:6]
In addition, we found that miR159, miR828 and miR858 collectively target 49 MYBs, 19 of which are known to regulate phenylpropanoid metabolism, a key pathway involved in stone hardening and fruit color development. [score:5]
MiR828 could cleave three MYB genes while miR858 targeted 18, among which they shared one common target. [score:5]
All the peach MYB targets for miR828, miR858, and miR159 were predicted by Targetfinder 1.6 with an align-score of no more than 5. Amino acid sequences of MYB factors in Arabidopsis were retrieved from TAIR (http://www. [score:5]
Therefore, we performed in silico target prediction and identified an additional three, nine and 24 MYB genes for miR159, miR828 and miR858, respectively, with an align score of less than 5. Thus, a total of 49 MYB target genes were found, four for miR159, 12 for miR828 and 40 for miR858. [score:5]
The 40 MYBs targeted by miR858 fell into 11 subgroups, which were shown to regulate diverse biological processes, including organ morphogenesis, lignification, anthocyanin biosynthesis and plant response to stresses in Arabidopsis (Figure 5e). [score:4]
Still, the potential regulatory roles of miR858, miR159 and miR828 in lignin, cell wall and flavonoid metabolism and synthesis pathways provides evidence for a significant role of sRNA in coordinating fruit development. [score:3]
In Arabidopsis, miR159, miR828 and miR858 target at least 13 MYB genes [39]. [score:3]
In addition, miR858 was found to target two other genes both encoding peroxisomal 3-ketoacyl-CoA thiolases that have critical roles in fatty acid metabolism [35] (Table 2). [score:3]
MiR858 shared five targeted MYBs with miR828 and two with miR159 (Figure 5a). [score:3]
The tissue-specific expression patterns were presented for the conserved miRNAs, miR160, miR167, miR169, miR319, miR390 and miR396, and the less-conserved miRNAs, miR828, miR858 and miR2118 (Figure 2b). [score:3]
Both miR828 and miR858 targeted MYB family genes. [score:3]
Notably, miR858 had the most gene targets identified in this study. [score:3]
In peach, at least 49 MYBs can be potentially targeted by miR159, miR828 and miR858 (Figure 5a). [score:3]
MiR858 targeted the majority of these MYBs. [score:2]
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2
[+] score: 4
Other miRNAs from this paper: ppe-MIR171f, ppe-MIR394a, ppe-MIR828, ppe-MIR171h, ppe-MIR171a, ppe-MIR171e, ppe-MIR171g, ppe-MIR171b, ppe-MIR171c, mdm-MIR156a, mdm-MIR156b, mdm-MIR156c, mdm-MIR156d, mdm-MIR156e, mdm-MIR156f, mdm-MIR156g, mdm-MIR156h, mdm-MIR156i, mdm-MIR156j, mdm-MIR156k, mdm-MIR156l, mdm-MIR156m, mdm-MIR156n, mdm-MIR156o, mdm-MIR156p, mdm-MIR156q, mdm-MIR156r, mdm-MIR156s, mdm-MIR156t, mdm-MIR156u, mdm-MIR156v, mdm-MIR156w, mdm-MIR156x, mdm-MIR156y, mdm-MIR156z, mdm-MIR156aa, mdm-MIR156ab, mdm-MIR156ac, mdm-MIR156ad, mdm-MIR156ae, mdm-MIR159a, mdm-MIR159b, mdm-MIR160a, mdm-MIR160b, mdm-MIR160c, mdm-MIR160d, mdm-MIR160e, mdm-MIR164a, mdm-MIR164b, mdm-MIR164c, mdm-MIR164d, mdm-MIR164e, mdm-MIR164f, mdm-MIR166i, mdm-MIR167a, mdm-MIR167b, mdm-MIR167c, mdm-MIR167d, mdm-MIR167e, mdm-MIR167f, mdm-MIR167g, mdm-MIR167h, mdm-MIR167i, mdm-MIR167j, mdm-MIR171a, mdm-MIR171b, mdm-MIR171c, mdm-MIR171d, mdm-MIR171e, mdm-MIR171f, mdm-MIR171g, mdm-MIR171h, mdm-MIR171i, mdm-MIR171j, mdm-MIR171k, mdm-MIR171l, mdm-MIR171m, mdm-MIR171n, mdm-MIR172a, mdm-MIR172b, mdm-MIR172c, mdm-MIR172d, mdm-MIR172e, mdm-MIR172f, mdm-MIR172g, mdm-MIR172h, mdm-MIR172i, mdm-MIR172j, mdm-MIR172k, mdm-MIR172l, mdm-MIR172m, mdm-MIR172n, mdm-MIR172o, mdm-MIR394a, mdm-MIR394b, mdm-MIR396e, mdm-MIR828a, mdm-MIR828b, mdm-MIR159c, mdm-MIR171o, mdm-MIR858, ppe-MIR156a, ppe-MIR156b, ppe-MIR156c, ppe-MIR156d, ppe-MIR156e, ppe-MIR156f, ppe-MIR156g, ppe-MIR156h, ppe-MIR156i, ppe-MIR159, ppe-MIR160a, ppe-MIR160b, ppe-MIR164a, ppe-MIR164b, ppe-MIR164c, ppe-MIR164d, ppe-MIR167a, ppe-MIR167b, ppe-MIR167c, ppe-MIR167d, ppe-MIR171d, ppe-MIR172a, ppe-MIR172b, ppe-MIR172c, ppe-MIR172d, ppe-MIR394b, mdm-MIR159d, mdm-MIR159e, mdm-MIR159f, mdm-MIR171p, mdm-MIR171q, mdm-MIR172p
In addition, miR828, and miR858, which are also involved in R2R3-MYB regulation[72] was predicted target MYB genes in Rosa (Additional file 2). [score:4]
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3
[+] score: 3
Other miRNAs from this paper: osa-MIR156a, osa-MIR156b, osa-MIR156c, osa-MIR156d, osa-MIR156e, osa-MIR156f, osa-MIR156g, osa-MIR156h, osa-MIR156i, osa-MIR156j, osa-MIR160a, osa-MIR160b, osa-MIR160c, osa-MIR160d, osa-MIR162a, osa-MIR164a, osa-MIR164b, osa-MIR166a, osa-MIR166b, osa-MIR166c, osa-MIR166d, osa-MIR166e, osa-MIR166f, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR169a, osa-MIR171a, osa-MIR393a, osa-MIR394, osa-MIR396a, osa-MIR396b, osa-MIR396c, osa-MIR397a, osa-MIR397b, osa-MIR399a, osa-MIR399b, osa-MIR399c, osa-MIR399d, osa-MIR399e, osa-MIR399f, osa-MIR399g, osa-MIR399h, osa-MIR399i, osa-MIR399j, osa-MIR399k, osa-MIR156k, osa-MIR156l, osa-MIR159a, osa-MIR159b, osa-MIR159c, osa-MIR159d, osa-MIR159e, osa-MIR159f, osa-MIR319a, osa-MIR319b, osa-MIR160e, osa-MIR160f, osa-MIR162b, osa-MIR164c, osa-MIR164d, osa-MIR164e, osa-MIR166k, osa-MIR166l, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR168a, osa-MIR168b, osa-MIR169b, osa-MIR169c, osa-MIR169d, osa-MIR169e, osa-MIR169f, osa-MIR169g, osa-MIR169h, osa-MIR169i, osa-MIR169j, osa-MIR169k, osa-MIR169l, osa-MIR169m, osa-MIR169n, osa-MIR169o, osa-MIR169p, osa-MIR169q, osa-MIR171b, osa-MIR171c, osa-MIR171d, osa-MIR171e, osa-MIR171f, osa-MIR171g, osa-MIR172a, osa-MIR172b, osa-MIR172c, osa-MIR166g, osa-MIR166h, osa-MIR166i, osa-MIR171h, osa-MIR393b, osa-MIR172d, osa-MIR171i, osa-MIR167j, osa-MIR166m, osa-MIR166j, osa-MIR164f, osa-MIR390, osa-MIR396e, osa-MIR528, osa-MIR169r, osa-MIR827, osa-MIR396f, osa-MIR396g, osa-MIR396h, osa-MIR396d, osa-MIR5083, ppe-MIR171f, ppe-MIR394a, ppe-MIR828, ppe-MIR171h, ppe-MIR171a, ppe-MIR171e, ppe-MIR169e, ppe-MIR319a, ppe-MIR319b, ppe-MIR171g, ppe-MIR171b, ppe-MIR171c, ppe-MIR156a, ppe-MIR156b, ppe-MIR156c, ppe-MIR156d, ppe-MIR156e, ppe-MIR156f, ppe-MIR156g, ppe-MIR156h, ppe-MIR156i, ppe-MIR159, ppe-MIR160a, ppe-MIR160b, ppe-MIR162, ppe-MIR164a, ppe-MIR164b, ppe-MIR164c, ppe-MIR164d, ppe-MIR166a, ppe-MIR166b, ppe-MIR166c, ppe-MIR166d, ppe-MIR166e, ppe-MIR167a, ppe-MIR167b, ppe-MIR167c, ppe-MIR167d, ppe-MIR168, ppe-MIR169a, ppe-MIR169b, ppe-MIR169c, ppe-MIR169d, ppe-MIR169f, ppe-MIR169g, ppe-MIR169h, ppe-MIR169i, ppe-MIR169j, ppe-MIR169k, ppe-MIR169l, ppe-MIR171d, ppe-MIR172a, ppe-MIR172b, ppe-MIR172c, ppe-MIR172d, ppe-MIR390, ppe-MIR393a, ppe-MIR393b, ppe-MIR394b, ppe-MIR396a, ppe-MIR396b, ppe-MIR397, ppe-MIR399a, ppe-MIR399b, ppe-MIR399c, ppe-MIR399d, ppe-MIR399e, ppe-MIR399f, ppe-MIR399g, ppe-MIR399h, ppe-MIR399i, ppe-MIR399j, ppe-MIR399k, ppe-MIR399l, ppe-MIR399m, ppe-MIR399n, ppe-MIR403, ppe-MIR827
However, the expression of five miRNA families (miR828, miR858, miR4376, miR4495 and miR5083) showed the lowest abundance, with only one read (Fig. 2B). [score:3]
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