MI0000092 hsa-mir-91 hsa-mir-91-13 MI0000071 miR-91 is expressed from the 5' arm of the mir-17 precursor hairpin.
MI0000096 hsa-mir-93-2 hsa-mir-93-7.2 MI0000095 Mourelatos et al. identified two copies of mir-93, but subsequent genome assemblies suggest they map to a single locus.
MI0000099 hsa-mir-97-6 MI0000088 miR-97 appears to be expressed from the same precursor sequence of the mir-30a precursor hairpin. The sequence is renamed miR-30a-5p.
MI0000104 hsa-mir-101-9 MI0000739 Duplicate entry removed.
MI0000106 hsa-mir-29b-3 hsa-mir-102-7.2 hsa-mir-102-3 MI0000105 Mourelatos et al. identified two copies of mir-102, which map to a single locus in subsequent genome assemblies. mir-102 was later renamed to mir-29b.
MI0000110 hsa-mir-104 hsa-mir-104-17 MI0000077 The mir-104 precursor sequence reported by Mourelatos et al. is the exact reverse complement of mir-21 from Lagos-Quintana et al.
MI0000149 mmu-mir-123 MI0000153 Mouse miR-123 originates from the same precursor as miR-126.
MI0000219 ath-MIR180a MI0000215 MIR180a is renamed MIR172a.
MI0000220 ath-MIR180b MI0000216 MIR180b is renamed MIR172b.
MI0000258 mmu-mir-1b MI0000139 The 3' end of miR-1b conflicts with the precursor sequences and genome assemblies. miR-1b, 1c and 1d are merged into mir-1-1 and mir-1-2.
MI0000260 hsa-mir-124b MI0000716 miR-124b is not found in either mouse or human genome assemblies so is removed.
MI0000278 hsa-mir-196-1 MI0000238 Remove duplicate entry.
MI0000280 hsa-mir-199a-1 MI0000242 Remove duplicate entry.
MI0000332 cel-mir-227 MI0000051 miR-227 appears to be expressed from the 5' arm of the mir-80 precursor hairpin.
MI0000372 dme-mir-263a MI0000343 Remove duplicate entry.
MI0000396 mmu-mir-297-2 MI0000395 Remove low complexity duplicate entry.
MI0000435 hsa-mir-1b-1 MI0000651 The 3' end of miR-1b conflicts with the precursor sequences and genome assemblies. miR-1b, 1c and 1d are merged into mir-1-1 and mir-1-2.
MI0000436 hsa-mir-1b-2 MI0000651 The 3' end of miR-1b conflicts with the precursor sequences and genome assemblies. miR-1b, 1c and 1d are merged into mir-1-1 and mir-1-2.
MI0000485 hsa-mir-189 MI0000080 miR-189 appears to be expressed from the same precursor hairpin as miR-24. Entries are merged.
MI0000506 cbr-mir-53 MI0001399 Low confidence in predicted C. briggsae homologue of miR-53. Later reinstated as MI0001399.
MI0000516 cbr-mir-77 MI0000515 Remove duplicate entry.
MI0000529 cbr-mir-232 MI0000528 Remove duplicate entry.
MI0000574 mmu-mir-26a-2 MI0000706 Remove duplicate sequence. Subsequent genome assemblies suggest two precursors so reinstated as MI0000706.
MI0000543 hsa-mir-321 MI0000543 miR-321 is a fragment of a Arg-tRNA.
MI0000705 mmu-mir-321 MI0000705 miR-321 is a fragment of a Arg-tRNA.
MI0000973 rno-mir-321 MI0000973 miR-321 is a fragment of a Arg-tRNA.
MI0001417 cbr-mir-37 MI0001416 Incorrectly named - duplicate of cbr-mir-36
MI0001399 cbr-mir-53 MI0000505 Incorrectly named - duplicate of cbr-mir-52
MI0001393 cbr-mir-65 MI0001392 Incorrectly named - duplicate of cbr-mir-64
MI0001081 ath-MIR407b MI0001079 MIR407a and b map to the same locus in NC_003071.3. MIR407b has therefore been removed.
MI0001076 ath-MIR405c MI0001075 MIR405b and c map to the same locus in NC_003076.4. MIR405c has therefore been removed.
MI0000686 mmu-mir-10a-2 MI0000685 Two mir-10a loci in previous mouse assemblies appear to have been collapsed in NCBIM33.
MI0001443 hsa-mir-422b MI0000786 from same precursor as miR-378
MI0001484 zma-MIR166j MI0001480 duplicate of MIR166a
MI0001432 hsa-mir-108 MI0000769 mir-108 is the reverse complement of mir-365
MI0001646 rno-mir-365-2 MI0001656 There is only one rat genomic locus for mir-365 in the RGCS 3.4 assembly
MI0001736 hsa-mir-329-1 MI0001725 duplicate entry
MI0001737 hsa-mir-329-2 MI0001726 duplicate entry
MI0001728 hsa-mir-453 MI0001727 duplicate entry
MI0001658 kshv-mir-K12-1a MI0002472 The names of the KSHV entries in release 6.0 were incompatable with those published in Cai et al and Pfeffer et al.
MI0001659 kshv-mir-K12-1b MI0002473 The names of the KSHV entries in release 6.0 were incompatable with those published in Cai et al and Pfeffer et al.
MI0001660 kshv-mir-K12-2 MI0002477 The names of the KSHV entries in release 6.0 were incompatable with those published in Cai et al and Pfeffer et al.
MI0001661 kshv-mir-K12-3 MI0002478 The names of the KSHV entries in release 6.0 were incompatable with those published in Cai et al and Pfeffer et al.
MI0001662 kshv-mir-K12-4 MI0002479 The names of the KSHV entries in release 6.0 were incompatable with those published in Cai et al and Pfeffer et al.
MI0001663 kshv-mir-K12-5 MI0002474 The names of the KSHV entries in release 6.0 were incompatable with those published in Cai et al and Pfeffer et al.
MI0001664 kshv-mir-K12-6 MI0002480 The names of the KSHV entries in release 6.0 were incompatable with those published in Cai et al and Pfeffer et al.
MI0001665 kshv-mir-K12-7 MI0002481 The names of the KSHV entries in release 6.0 were incompatable with those published in Cai et al and Pfeffer et al.
MI0001666 kshv-mir-K12-8 MI0002482 The names of the KSHV entries in release 6.0 were incompatable with those published in Cai et al and Pfeffer et al.
MI0001667 kshv-mir-K12-9 MI0002483 The names of the KSHV entries in release 6.0 were incompatable with those published in Cai et al and Pfeffer et al.
MI0001668 kshv-mir-K12-10 MI0002475 The names of the KSHV entries in release 6.0 were incompatable with those published in Cai et al and Pfeffer et al.
MI0000039 cel-mir-68 MI0000039 mir-68 has been reclassified as an siRNA (Lim et al. Genes Dev 2003 17:991-1008)
MI0000040 cel-mir-69 MI0000040 mir-69 has been reclassified as an siRNA (Lim et al. Genes Dev 2003 17:991-1008)
MI0001864 dre-let-7b-1 MI0001865 Only one copy of let-7b is found in the Zv5 genome assembly -- duplicate removed.
MI0003250 fru-mir-204b MI0003465 Only one copy of mir-204 is found in the FUGU4 genome assembly -- mir-204b removed.
MI0004432 mmu-mir-P455* MI0004679 Plasterk unpublished sequence identical to mir-455
MI0001039 osa-MIR395o MI0001038 3 identical MIR395 hairpins map to just one locus in the TIGR 4.0 genome assembly, so entries merged
MI0001040 osa-MIR395r MI0001038 3 identical MIR395 hairpins map to just one locus in the TIGR 4.0 genome assembly, so entries merged
MI0001153 osa-MIR395s MI0001044 3 identical miR395 hairpin precursors map to only one locus in TIGR 4.0 genome assembly, so entries merged
MI0001045 osa-MIR395p MI0001044 3 identical miR395 hairpin precursors map to only one locus in TIGR 4.0 genome assembly, so entries merged
MI0001949 dre-mir-30e-1 MI0001950 Genome assembly Zv6 contains only one mir-30e locus -- second removed
MI0002129 dre-mir-430a-20 MI0002114 Locus not present in Zv6 genome assembly -- removed from database
MI0002130 dre-mir-430a-21 MI0002114 Locus not present in Zv6 genome assembly -- removed from database
MI0002137 dre-mir-430a-28 MI0002114 Locus not present in Zv6 genome assembly -- removed from database
MI0002167 dre-mir-430b-27 MI0002146 Locus not present in Zv6 genome assembly -- removed from database
MI0002168 dre-mir-430b-28 MI0002146 Locus not present in Zv6 genome assembly -- removed from database
MI0002169 dre-mir-430b-29 MI0002146 Locus not present in Zv6 genome assembly -- removed from database
MI0002084 dre-mir-430c-7 MI0002079 Locus not present in Zv6 genome assembly -- removed from database
MI0002085 dre-mir-430c-8 MI0002079 Locus not present in Zv6 genome assembly -- removed from database
MI0002086 dre-mir-430c-9 MI0002079 Locus not present in Zv6 genome assembly -- removed from database
MI0001942 dre-mir-30b-2 MI0001941 Three identical zebrafish mir-30a precursor sequences map to just one locus in genome assembly Zv6
MI0001943 dre-mir-30b-3 MI0001941 Three identical zebrafish mir-30a precursor sequences map to just one locus in genome assembly Zv6
MI0001869 dre-let-7d-2 MI0001868 Two identical zebrafish let-7d precursor sequences map to just one locus in genome assembly Zv6
MI0002058 dre-mir-223-2 MI0001389 Two identical zebrafish mir-223 precursor sequences map to just one locus in genome assembly Zv6
MI0001999 dre-mir-135-4 MI0001998 Two identical zebrafish mir-135 precursor sequences map to just one locus in genome assembly Zv6
MI0001945 dre-mir-30c-2 MI0001944 Two identical zebrafish mir-30c precursor sequences map to just one locus in genome assembly Zv6
MI0002020 dre-mir-153b-2 MI0002019 Two identical zebrafish mir-153b precursor sequences map to just one locus in genome assembly Zv6
MI0002182 dre-mir-460-2 MI0002181 Two identical zebrafish mir-460 precursor sequences map to just one locus in genome assembly Zv6
MI0002075 dre-mir-454a-2 MI0002074 Two identical zebrafish mir-454a precursor sequences map to just one locus in genome assembly Zv6
MI0001914 dre-mir-23a-2 MI0001913 Two identical zebrafish mir-23a precursor sequences map to just one locus in genome assembly Zv6
MI0002018 dre-mir-152-2 MI0002017 Two identical zebrafish mir-152 precursor sequences map to just one locus in genome assembly Zv6
MI0001947 dre-mir-30d-2 MI0001946 Three identical zebrafish mir-30d precursor sequences map to just one locus in genome assembly Zv6
MI0001948 dre-mir-30d-3 MI0001946 Three identical zebrafish mir-30d precursor sequences map to just one locus in genome assembly Zv6
MI0001859 dre-let-7a-3 MI0001858 Two identical zebrafish let-7a precursor sequences map to just one locus in genome assembly Zv6
MI0001924 dre-mir-26a-2 MI0001923 Two identical zebrafish mir-26a precursor sequences map to just one locus in genome assembly Zv6
MI0002011 dre-mir-145-2 MI0002010 Two identical zebrafish mir-145 precursor sequences map to just one locus in genome assembly Zv6
MI0002025 dre-mir-181c-2 MI0002024 Two identical zebrafish mir-181c precursor sequences map to just one locus in genome assembly Zv6
MI0001990 dre-mir-132-2 MI0001989 Two identical zebrafish mir-132 precursor sequences map to just one locus in genome assembly Zv6
MI0001939 dre-mir-29a-2 MI0001938 Two identical zebrafish mir-29a precursor sequences map to just one locus in genome assembly Zv6
MI0002044 dre-mir-205-2 MI0001378 Two identical zebrafish mir-205 precursor sequences map to just one locus in genome assembly Zv6
MI0001935 dre-mir-29b-3 MI0001934 Two identical zebrafish mir-29b precursor sequences map to just one locus in genome assembly Zv6
MI0001937 dre-mir-29b-5 MI0001936 Two identical zebrafish mir-29b precursor sequences map to just one locus in genome assembly Zv6
MI0002055 dre-mir-219-4 MI0001385 Four identical zebrafish mir-219 precursor sequences map to just one locus in genome assembly Zv6
MI0002056 dre-mir-219-5 MI0001385 Four identical zebrafish mir-219 precursor sequences map to just one locus in genome assembly Zv6
MI0002057 dre-mir-219-6 MI0001385 Four identical zebrafish mir-219 precursor sequences map to just one locus in genome assembly Zv6
MI0001974 dre-mir-125a-3 MI0001973 Two identical zebrafish mir-125a precursor sequences map to just one locus in genome assembly Zv6
MI0002127 dre-mir-430a-18 MI0002121 8 identical zebrafish mir-430a precursor sequences map to 6 loci in genome assembly Zv6
MI0002128 dre-mir-430a-19 MI0002121 8 identical zebrafish mir-430a precursor sequences map to 6 loci in genome assembly Zv6
MI0002136 dre-mir-430a-25 MI0001527 Two identical zebrafish mir-430a precursor sequences map to just one locus in genome assembly Zv6
MI0002159 dre-mir-430b-19 MI0002152 16 identical zebrafish mir-430b precursor sequences map to 9 loci in genome assembly Zv6
MI0002160 dre-mir-430b-20 MI0002152 16 identical zebrafish mir-430b precursor sequences map to 9 loci in genome assembly Zv6
MI0002161 dre-mir-430b-21 MI0002152 16 identical zebrafish mir-430b precursor sequences map to 9 loci in genome assembly Zv6
MI0002162 dre-mir-430b-22 MI0002152 16 identical zebrafish mir-430b precursor sequences map to 9 loci in genome assembly Zv6
MI0002163 dre-mir-430b-23 MI0002152 16 identical zebrafish mir-430b precursor sequences map to 9 loci in genome assembly Zv6
MI0002164 dre-mir-430b-24 MI0002152 16 identical zebrafish mir-430b precursor sequences map to 9 loci in genome assembly Zv6
MI0002165 dre-mir-430b-25 MI0002152 16 identical zebrafish mir-430b precursor sequences map to 9 loci in genome assembly Zv6
MI0002145 dre-mir-430b-5 MI0001528 5 identical zebrafish mir-430b precursor sequences map to 4 loci in genome assembly Zv6
MI0002102 dre-mir-430c-22 MI0002079 28 identical zebrafish mir-430b precursor sequences map to only 19 loci in genome assembly Zv6
MI0002103 dre-mir-430c-23 MI0002079 28 identical zebrafish mir-430b precursor sequences map to only 19 loci in genome assembly Zv6
MI0002104 dre-mir-430c-24 MI0002079 28 identical zebrafish mir-430b precursor sequences map to only 19 loci in genome assembly Zv6
MI0002105 dre-mir-430c-25 MI0002079 28 identical zebrafish mir-430b precursor sequences map to only 19 loci in genome assembly Zv6
MI0002106 dre-mir-430c-26 MI0002079 28 identical zebrafish mir-430b precursor sequences map to only 19 loci in genome assembly Zv6
MI0002107 dre-mir-430c-27 MI0002079 28 identical zebrafish mir-430b precursor sequences map to only 19 loci in genome assembly Zv6
MI0002108 dre-mir-430c-28 MI0002079 28 identical zebrafish mir-430b precursor sequences map to only 19 loci in genome assembly Zv6
MI0002109 dre-mir-430c-29 MI0002079 28 identical zebrafish mir-430b precursor sequences map to only 19 loci in genome assembly Zv6
MI0002110 dre-mir-430c-30 MI0002079 28 identical zebrafish mir-430b precursor sequences map to only 19 loci in genome assembly Zv6
MI0001964 dre-mir-107-2 MI0001963 Two identical zebrafish mir-107 precursor sequences map to only one loci in genome assembly Zv6
MI0002078 dre-mir-455-2 MI0002077 Two identical zebrafish mir-455 precursor sequences map to only one locus in genome assembly Zv6
MI0001797 zma-MIR395c MI0001799 mispredicted hairpin overlapped with MIR395a
MI0005208 mmu-mir-744 MI0004124 Duplicates sequence MI0004124
MI0003606 hsa-mir-594 MI0003606 miR-594 is a fragment of an annotated tRNA gene.
MI0001285 gga-mir-222b MI0001177 Latest chicken genome assembly suggests that mir-222a and b are identical
MI0005001 gga-mir-757-3 MI0004999 3 predicted mir-757 loci collapse to 2 in latest chicken genome assembly
MI0001286 gga-mir-7b-2 MI0001279 2 mir-7b loci collapse to 1 in the latest chicken genome assembly
MI0005449 ath-MIR472 MI0005102 Arabidopsis MIR772 and MIR472 are the same
MI0005679 ppt-MIR535e MI0003504 MIR535e and MIR535c map to the same genomic locus in JGI1.1
MI0005666 ppt-MIR390d MI0003494 MIR390d and MIR390a map to the same genomic locus in JGI1.1
MI0005664 ppt-MIR319e MI0003496 MIR319e and MIR319a map to the same genomic locus in JGI1.1
MI0005662 ppt-MIR171c MI0005689 MIR171c and MIR171b map to the same locus in the JGI1.1 genome assembly
MI0005663 ppt-MIR171d MI0005688 MIR171c and MIR171b map to the same locus in the JGI1.1 genome assembly
MI0000771 mmu-mir-366 MI0006127 mir-366 was never published. The same sequence was later published as mir-582.
MI0005931 ppt-MIR535e MI0003504 MIR535e is identical to MIR535c
MI0004709 ppt-MIR1210 MI0005672 MIR1210 is expressed from the MIR477a hairpin precursor
MI0004712 ppt-MIR1213 MI0005674 MIR1213 is expressed from the MIR477g hairpin precursor
MI0005781 pta-MIR162 MI0005781 Submitted by Lu et al, but insufficient similarity to assign name without experiment
MI0006129 mmu-mir-368 MI0003533 miR-368 and miR-376c map to the same locus. miR-376c is retained.
MI0006139 rno-mir-368 MI0003543 miR-368 and miR-376c map to the same locus. miR-376c is retained.
MI0006109 hsa-mir-516b-2 MI0003167 Duplicate entry of previously named miR-516a-3, which is renamed to replace this.
MI0006110 hsa-mir-516b-1 MI0003172 Duplicate entry of previously named miR-516a-4, which is renamed to replace this.
MI0006111 hsa-mir-520c-2 MI0003155 miR-520c-2 is a duplicate of miR-520b.
MI0006108 hsa-mir-517a-2 MI0003165 miR-517a-2 is a duplicate of miR-517b.
MI0005486 mmu-mir-877-2 MI0005553 miR-877-1 and -2 map to the same locus in the mouse genome assembly.
MI0006138 rno-mir-344-2 MI0000629 miR-344-1 and -2 map to the same locus in the rat genome assembly.
MI0003571 hsa-mir-565 MI0003571 This sequence is likely a tRNA fragment, not a miRNA (Berezikov et al, Nat Gen 2006 38:S2-7).
MI0004108 hsa-mir-P683-5p MI0003938 Duplicate of MI0003938
MI0003566 hsa-mir-560 MI0003566 mir-560 is likely a fragment of an rRNA transcript, not a miRNA (Landgraf et al, Cell. 2007 129(7):1401-14.)
MI0005522 hsa-mir-672 MI0004258 mir-672 was cloned from human, but is absent in the NCBI36 genome assembly. The previously displayed human hairpin was the mouse sequence.
MI0005535 hsa-mir-674 MI0004611 mir-674 was cloned from human, but is absent in the NCBI36 genome assembly. The previously displayed human hairpin was the mouse sequence.
MI0005526 hsa-mir-871 MI0005471 mir-871 was cloned from human, but is absent in the NCBI36 genome assembly. The previously displayed human hairpin was the mouse sequence.
MI0005558 hsa-mir-872 MI0005549 mir-872 was cloned from human, but is absent in the NCBI36 genome assembly. The previously displayed human hairpin was the mouse sequence.
MI0006651 hsa-mir-1321 MI0006651 Sequence withdrawn because of poor structure
MI0006655 hsa-mir-1324 MI0006655 Sequence withdrawn because of poor structure
MI0006851 oan-mir-186b MI0006741 Probably not a real miRNA. Perhaps a sequence variant of miR-186 which happens to hit the genome.
MI0006817 oan-let-7a MI0006817 Probably not a real miRNA. Perhaps a variant of another let-7 sequence which happens to hit the genome.
MI0007023 osa-MIR1439a MI0007023 Withdrawn by author -- family maps to a transposon
MI0007026 osa-MIR1439b MI0007026 Withdrawn by author -- family maps to a transposon
MI0007027 osa-MIR1439c MI0007027 Withdrawn by author -- family maps to a transposon
MI0006958 oan-mir-1422k-2 MI0006719 Duplicate mir-1422k entries removed
MI0005202 hsa-mir-801 MI0005202 miR-801 appears to be a fragment of U11 spliceosomal RNA, so is removed
MI0005376 mmu-mir-801 MI0005376 miR-801 appears to be a fragment of U11 spliceosomal RNA, so is removed
MI0006105 hsv1-mir-LAT MI0006105 The discovery of herpes miR-LAT was retracted by the authors in Nature 2008 451(7178):600.
MI0008053 cfa-mir-20-2 MI0008052 mir-20-1 and mir-20-2 map to a single locus in the dog genome assembly (CanFam2.0). -2 is removed.
MI0008236 osa-MIR1428a MI0006968 Duplicate of MIR1428, removed
MI0005117 hsa-mir-768 MI0005117 mir-768 overlaps an annotated snoRNA, HBII-239. Phylogenetic analysis in all vertebrates supports the snoRNA annotation, with poor conservation of the reported mature miRNA sequence (Weber M, pers comm). It is therefore removed from the database.
MI0007912 mml-mir-768 MI0007912 mir-768 overlaps an annotated snoRNA, HBII-239. Phylogenetic analysis in all vertebrates supports the snoRNA annotation, with poor conservation of the reported mature miRNA sequence (Weber M, pers comm). It is therefore removed from the database.
MI0003759 hsa-mir-P993 MI0006384 Unpublished Berezikov candidate, superceded by new entry
MI0003770 hsa-mir-P1007 MI0005756 Unpublished Berezikov candidate, superceded by new entry
MI0003794 hsa-mir-P980 MI0005757 Unpublished Berezikov candidate, superceded by new entry
MI0003826 hsa-mir-P711 MI0005767 Unpublished Berezikov candidate, superceded by new entry
MI0000610 rno-mir-333 MI0000610 The described mir-333 precursor overlaps a strongly predicted tRNA (tRNAscan-SE) and has over 15000 highly similar matches in the rat genome. The mature sequence is therefore likely a mis-annotated fragment of a tRNA-derived SINE.
MI0009915 mmu-let-7j MI0009915 Retracted by the authors prior to publication
MI0009916 mmu-let-7k MI0009916 Retracted by the authors prior to publication
MI0006456 bna-MIR171g MI0005771 Duplicate entry removed
MI0008936 tca-mir-9a MI0008935 Merged with duplicate entry
MI0005752 ame-mir-930 MI0005752 Apis miR-930 appears to be a misannotated fragment of the distal-less gene (Peterson K, pers. comm.), so is removed from the database.
MI0010002 bmo-mir-930 MI0010002 Bombyx miR-930 appears to be a misannotated fragment of a homeobox gene (Peterson K, pers. comm.), so is removed from the database.
MI0009999 bmo-mir-925 MI0005746 miR-925 appears to be a misannotated fragment HRNBP1 coding seqeunce (Peterson K, pers. comm.), so is removed from the database.
MI0005746 ame-mir-925 MI0005746 miR-925 appears to be a misannotated fragment HRNBP1 coding seqeunce (Peterson K, pers. comm.), so is removed from the database.
MI0009907 bta-mir-931 MI0005753 Apis miR-931 appears to be a misannotated fragment of nefrin coding seqeunce (Peterson K, pers. comm.), so is removed from the database.
MI0005753 ame-mir-931 MI0005753 Apis miR-931 appears to be a misannotated fragment of nefrin coding seqeunce (Peterson K, pers. comm.), so is removed from the database.
MI0005747 ame-mir-926 MI0005747 Apis miR-931 appears to be a misannotated fragment of glutamate receptor 1B gene (Peterson K, pers. comm.), so is removed from the database.
MI0008392 bmo-mir-1922 MI0008392 Bombyx miR-1922 appears to be a misannotated fragment of 28S rRNA (Peterson K, pers. comm.), so is removed from the database.
MI0008396 bmo-mir-1925 MI0008396 Bombyx miR-1925 appears to be a misannotated fragment of 5S rRNA (Peterson K, pers. comm.), so is removed from the database.
MI0008395 bmo-mir-1924 MI0008395 Bombyx miR-1924 appears to be a misannotated fragment of the spectrin mRNA (Peterson K, pers. comm.), so is removed from the database.
MI0010615 ame-mir-279-2 MI0005734 Second locus maps to Unplaced contig in the assembly, so removed for now
MI0010010 bfl-mir-9 MI0010520 Remove duplicate entry
MI0004785 dre-mir-739 MI0004785 mir-739 appears to be a fragment of rRNA, and so is removed from the database
MI0005715 hsa-mir-923 MI0005715 Human mir-923 appears to be a frgament of the 28S rRNA, so is removed from the database
MI0008878 ptr-mir-923 MI0008878 Human mir-923 appears to be a frgament of the 28S rRNA, so is removed from the database
MI0008207 gga-mir-739 MI0008207 mir-739 a appears to be a fragment of 28S rRNA, so is removed
MI0008387 xla-mir-739 MI0008387 mir-739 a appears to be a fragment of 28S rRNA, so is removed
MI0009890 bta-mir-739 MI0009890 mir-739 a appears to be a fragment of 28S rRNA, so is removed
MI0010440 cfa-mir-739 MI0010440 mir-739 a appears to be a fragment of 28S rRNA, so is removed
MI0004683 mmu-mir-699 MI0004683 mmu-mir-699 appears to be a fragment of RNase MRP RNA (Paul Gardner, pers comm), so is removed from miRBase
MI0010638 bfl-mir-103 MI0010500 Remove duplicate entry
MI0006483 bna-MIR1140b MI0006482 Remove duplicate entry
MI0010364 cfa-mir-211-1 MI0010373 Remove duplicate entry
MI0003833 hsa-mir-675b MI0005416 Remove duplicate entry
MI0010472 bta-mir-1300a MI0006360 mir-1300 appears to be a fragment of the EEF1A mRNA. The putative miRNA has been experimentally detected only in human. Annotation by homology finds many EEF hits and is therefore inappropriate.
MI0010482 bta-mir-1300b MI0006360 mir-1300 appears to be a fragment of the EEF1A mRNA. The putative miRNA has been experimentally detected only in human. Annotation by homology finds many EEF hits and is therefore inappropriate.
MI0008504 ptr-mir-1300b MI0006360 mir-1300 appears to be a fragment of the EEF1A mRNA. The putative miRNA has been experimentally detected only in human. Annotation by homology finds many EEF hits and is therefore inappropriate.
MI0008505 ptr-mir-1300a-3 MI0006360 mir-1300 appears to be a fragment of the EEF1A mRNA. The putative miRNA has been experimentally detected only in human. Annotation by homology finds many EEF hits and is therefore inappropriate.
MI0008506 ptr-mir-1300a-4 MI0006360 mir-1300 appears to be a fragment of the EEF1A mRNA. The putative miRNA has been experimentally detected only in human. Annotation by homology finds many EEF hits and is therefore inappropriate.
MI0008507 ptr-mir-1300a-1 MI0006360 mir-1300 appears to be a fragment of the EEF1A mRNA. The putative miRNA has been experimentally detected only in human. Annotation by homology finds many EEF hits and is therefore inappropriate.
MI0008508 ptr-mir-1300a-5 MI0006360 mir-1300 appears to be a fragment of the EEF1A mRNA. The putative miRNA has been experimentally detected only in human. Annotation by homology finds many EEF hits and is therefore inappropriate.
MI0008509 ptr-mir-1300a-6 MI0006360 mir-1300 appears to be a fragment of the EEF1A mRNA. The putative miRNA has been experimentally detected only in human. Annotation by homology finds many EEF hits and is therefore inappropriate.
MI0008510 ptr-mir-1300a-7 MI0006360 mir-1300 appears to be a fragment of the EEF1A mRNA. The putative miRNA has been experimentally detected only in human. Annotation by homology finds many EEF hits and is therefore inappropriate.
MI0008511 ptr-mir-1300a-8 MI0006360 mir-1300 appears to be a fragment of the EEF1A mRNA. The putative miRNA has been experimentally detected only in human. Annotation by homology finds many EEF hits and is therefore inappropriate.
MI0008512 ptr-mir-1300a-9 MI0006360 mir-1300 appears to be a fragment of the EEF1A mRNA. The putative miRNA has been experimentally detected only in human. Annotation by homology finds many EEF hits and is therefore inappropriate.
MI0008513 ptr-mir-1300a-10 MI0006360 mir-1300 appears to be a fragment of the EEF1A mRNA. The putative miRNA has been experimentally detected only in human. Annotation by homology finds many EEF hits and is therefore inappropriate.
MI0008514 ptr-mir-1300a-11 MI0006360 mir-1300 appears to be a fragment of the EEF1A mRNA. The putative miRNA has been experimentally detected only in human. Annotation by homology finds many EEF hits and is therefore inappropriate.
MI0008515 ptr-mir-1300a-2 MI0006360 mir-1300 appears to be a fragment of the EEF1A mRNA. The putative miRNA has been experimentally detected only in human. Annotation by homology finds many EEF hits and is therefore inappropriate.
MI0008373 xla-mir-1300 MI0006360 mir-1300 appears to be a fragment of the EEF1A mRNA. The putative miRNA has been experimentally detected only in human. Annotation by homology finds many EEF hits and is therefore inappropriate.
MI0006360 hsa-mir-1300 MI0006360 The sequenced mature miR-1300 appears to be a fragment of the EEF1A mRNA, so is removed from the database.
MI0001559 sbi-MIR169e MI0001559 This sequence is absent from the JGI sbi1 genome assembly, so is removed from the database
MI0001571 sbi-MIR172d MI0001571 This sequence is absent from the JGI sbi1 genome assembly, so is removed from the database
MI0001562 sbi-MIR169h MI0001561 MIR169g and MIR169h map to a single location in the JGI sbi1 genome assembly. The latter is removed here.
MI0001532 sbi-MIR394b MI0001531 MIR394a and MIR394b map to a single location in the JGI sbi1 genome assembly. The latter is removed here.
MI0001535 sbi-MIR395c MI0001536 MIR395c overlaps MIR395d and MIR395e, so is removed.
MI0010809 sme-mir-753c MI0010766 Withdrawn by authors prior to publication. Not enough read evidence to distinguish from other mir-753 loci in poor quality genome assembly (Friedlaender, pers comm).
MI0010812 sme-mir-753d-1 MI0010766 Withdrawn by authors prior to publication. Not enough read evidence to distinguish from other mir-753 loci in poor quality genome assembly (Friedlaender, pers comm).
MI0010821 sme-mir-753d-2 MI0010766 Withdrawn by authors prior to publication. Not enough read evidence to distinguish from other mir-753 loci in poor quality genome assembly (Friedlaender, pers comm).
MI0010824 sme-mir-753f MI0010766 Withdrawn by authors prior to publication. Not enough read evidence to distinguish from other mir-753 loci in poor quality genome assembly (Friedlaender, pers comm).
MI0010798 sme-mir-754b-2 MI0010776 Withdrawn by authors prior to publication. Not enough read evidence to distinguish from other mir-754 loci in poor quality genome assembly (Friedlaender, pers comm).
MI0010816 sme-mir-754e MI0010776 Withdrawn by authors prior to publication. Not enough read evidence to distinguish from other mir-754 loci in poor quality genome assembly (Friedlaender, pers comm).
MI0010513 bfl-mir-2074 MI0010513 mir-2074 is a fragment of LSU rRNA and so is removed from the database (Peterson K, pers comm).
MI0007060 gga-mir-1455 MI0007060 mir-1455 appears to be a fragment of a tRNA, so is removed from the database
MI0012955 eca-mir-322 MI0012963 mir-322 and mir-424 from Zhou et al map to the same locus, so mir-322 is removed from the database.
MI0010756 mmu-mir-2143-1 MI0010756 miR-2143 is a fragment of 28S rRNA so is removed from the database.
MI0010757 mmu-mir-2143-2 MI0010757 miR-2143 is a fragment of 28S rRNA so is removed from the database.
MI0010758 mmu-mir-2143-3 MI0010758 miR-2143 is a fragment of 28S rRNA so is removed from the database.
MI0010759 mmu-mir-2144 MI0010759 miR-2144 is a fragment of 28S rRNA so is removed from the database.
MI0005422 cbr-mir-789a MI0005422 cbr-mir-789a appears to be a fragment of a tRNA, so is removed.
MI0008201 cel-mir-1831 MI0008201 mir-1831 appears to be a fragment of a U1 snRNA, so is removed.
MI0005485 mmu-mir-197 MI0005485 Only two clones support the presence of mir-197 in mouse (Landgraf et al), but the sequence does not map in a stem-loop region of the genomic sequence or any any known mouse transcript sequence. It is therefore removed from miRBase.
MI0004649 mmu-mir-685 MI0004649 mir-685 is found to be a fragment of RNase P RNA, so is removed from the database.
MI0009888 bta-mir-685 MI0009888 mir-685 is found to be a fragment of RNase P RNA, so is removed from the database.
MI0012620 rno-mir-685 MI0012620 mir-685 is found to be a fragment of RNase P RNA, so is removed from the database.
MI0012660 eca-mir-685 MI0012660 mir-685 is found to be a fragment of RNase P RNA, so is removed from the database.
MI0013851 tgu-mir-204-5 MI0013794 tgu-mir-204-5 overlaps mir-204-4 in the genome sequence, so is removed.
MI0004226 mmu-mir-P1087 MI0014099 Same locus, different mature miRNAs validated by Chiang and Bartel (MI0014099).
MI0003813 hsa-mir-P847 MI0014179 Berezikov candidate validated by Stark et al.
MI0004063 hsa-mir-P864 MI0014182 Berezikov candidate validated by Stark et al.
MI0007555 gga-mir-1810 MI0007555 mir-1810 is a fragment of 28S rRNA, so is removed from the database.
MI0005204 mmu-mir-805 MI0005204 mir-805 maps to the Mt genome, and overlaps a Mt tRNA sequence so is removed.
MI0009984 hsa-mir-1974 MI0009984 mir-1974 maps to the Mt genome, and overlaps a Mt tRNA sequence so is removed.
MI0009987 hsa-mir-1977 MI0009987 mir-1977 maps to the Mt genome, and overlaps a Mt tRNA sequence so is removed.
MI0009988 hsa-mir-1978 MI0009988 mir-1978 maps to the Mt genome, and overlaps a Mt tRNA sequence so is removed.
MI0003842 hsa-mir-P501b MI0003842 Berezikov candidate subsequently verified
MI0008390 bmo-mir-1920 MI0008390 The pattern of reads from high throughput sequencing experiments (Jagadeeswaran et al. BMC Genomics, 2010) overlapping this locus is not consistent with microRNA processing from a hairpin precursor. This sequence is therefore removed from the database.
MI0008391 bmo-mir-1921 MI0008391 The pattern of reads from high throughput sequencing experiments (Jagadeeswaran et al. BMC Genomics, 2010) overlapping this locus is not consistent with microRNA processing from a hairpin precursor. This sequence is therefore removed from the database.
MI0012383 bmo-mir-2815a-1 MI0012383 The mir-2815 family are misannotated fragments of tRNAs, so are removed from the database.
MI0012387 bmo-mir-2815a-7 MI0012387 The mir-2815 family are misannotated fragments of tRNAs, so are removed from the database.
MI0012397 bmo-mir-2815b-1 MI0012397 The mir-2815 family are misannotated fragments of tRNAs, so are removed from the database.
MI0012399 bmo-mir-2815a-2 MI0012399 The mir-2815 family are misannotated fragments of tRNAs, so are removed from the database.
MI0012412 bmo-mir-2815a-3 MI0012412 The mir-2815 family are misannotated fragments of tRNAs, so are removed from the database.
MI0012418 bmo-mir-2815b-2 MI0012418 The mir-2815 family are misannotated fragments of tRNAs, so are removed from the database.
MI0012431 bmo-mir-2815a-4 MI0012431 The mir-2815 family are misannotated fragments of tRNAs, so are removed from the database.
MI0012432 bmo-mir-2815b-3 MI0012432 The mir-2815 family are misannotated fragments of tRNAs, so are removed from the database.
MI0012443 bmo-mir-2815a-5 MI0012443 The mir-2815 family are misannotated fragments of tRNAs, so are removed from the database.
MI0012447 bmo-mir-2815a-6 MI0012447 The mir-2815 family are misannotated fragments of tRNAs, so are removed from the database.
MI0012459 bmo-mir-2815b-4 MI0012459 The mir-2815 family are misannotated fragments of tRNAs, so are removed from the database.
MI0012290 bmo-mir-216 MI0012290 The candidate bmo-mir-216 sequence does not adopt a miRNA-like hairpin, so is removed from the database.
MI0012189 bmo-mir-2740 MI0012189 This candidate Bombyx sequence does not adopt a miRNA-like hairpin, so is removed from the database.
MI0014295 bmo-mir-3240 MI0014295 This candidate Bombyx sequence does not adopt a miRNA-like hairpin, so is removed from the database.
MI0014437 bmo-mir-3376 MI0014437 This candidate Bombyx sequence does not adopt a miRNA-like hairpin, so is removed from the database.
MI0014441 bmo-mir-3380 MI0014441 This candidate Bombyx sequence does not adopt a miRNA-like hairpin, so is removed from the database.
MI0014451 bmo-mir-3390 MI0014451 This candidate Bombyx sequence does not adopt a miRNA-like hairpin, so is removed from the database.
MI0012184 bmo-mir-2735 MI0012184 This candidate Bombyx sequence is a fragment of a predicted protein-coding exon, so is removed.
MI0012194 bmo-mir-2743 MI0012194 This candidate Bombyx sequence is a fragment of a predicted protein-coding exon, so is removed.
MI0012330 bmo-mir-2773-1 MI0012330 This candidate Bombyx sequence is a fragment of a predicted protein-coding exon, so is removed.
MI0012343 bmo-mir-2773-2 MI0012343 This candidate Bombyx sequence is a fragment of a predicted protein-coding exon, so is removed.
MI0012342 bmo-mir-2773-3 MI0012342 This candidate Bombyx sequence is a fragment of a predicted protein-coding exon, so is removed.
MI0012378 bmo-mir-2802 MI0012378 This candidate Bombyx sequence is a fragment of a predicted protein-coding exon, so is removed.
MI0012392 bmo-mir-2811 MI0012392 This candidate Bombyx sequence is a fragment of a predicted protein-coding exon, so is removed.
MI0012417 bmo-mir-2823 MI0012417 This candidate Bombyx sequence is a fragment of a predicted protein-coding exon, so is removed.
MI0012425 bmo-mir-2829 MI0012425 This candidate Bombyx sequence is a fragment of a predicted protein-coding exon, so is removed.
MI0012458 bmo-mir-2844 MI0012458 This candidate Bombyx sequence is a fragment of a predicted protein-coding exon, so is removed.
MI0012470 bmo-mir-2850a-1 MI0012470 This candidate Bombyx sequence is a fragment of a predicted protein-coding exon, so is removed.
MI0012442 bmo-mir-2850a-2 MI0012442 This candidate Bombyx sequence is a fragment of a predicted protein-coding exon, so is removed.
MI0013004 bmo-mir-2850a-3 MI0013004 This candidate Bombyx sequence is a fragment of a predicted protein-coding exon, so is removed.
MI0013005 bmo-mir-2850a-4 MI0013005 This candidate Bombyx sequence is a fragment of a predicted protein-coding exon, so is removed.
MI0012354 bmo-mir-2850b MI0012354 This candidate Bombyx sequence is a fragment of a predicted protein-coding exon, so is removed.
MI0013001 bmo-mir-2858 MI0013001 This candidate Bombyx sequence is a fragment of a predicted protein-coding exon, so is removed.
MI0012197 bmo-mir-2746 MI0012197 This candidate Bombyx sequence is a fragment of U1 RNA.
MI0012993 bmo-mir-2853 MI0012993 This candidate Bombyx sequence is a fragment of U2 RNA.
MI0012366 bmo-mir-2793 MI0012366 This candidate Bombyx sequence is a fragment of a tRNA.
MI0012172 bmo-mir-2725 MI0012172 This length of this candidate Bombyx mature sequences is outside the expected range. The entry is deleted.
MI0012173 bmo-mir-2726 MI0012173 This length of this candidate Bombyx mature sequences is outside the expected range. The entry is deleted.
MI0012174 bmo-mir-2727 MI0012174 This length of this candidate Bombyx mature sequences is outside the expected range. The entry is deleted.
MI0012176 bmo-mir-2728 MI0012176 This length of this candidate Bombyx mature sequences is outside the expected range. The entry is deleted.
MI0012181 bmo-mir-2732 MI0012181 This length of this candidate Bombyx mature sequences is outside the expected range. The entry is deleted.
MI0012191 bmo-mir-2741 MI0012191 This length of this candidate Bombyx mature sequences is outside the expected range. The entry is deleted.
MI0012198 bmo-mir-2747 MI0012198 This length of this candidate Bombyx mature sequences is outside the expected range. The entry is deleted.
MI0012200 bmo-mir-2749 MI0012200 This length of this candidate Bombyx mature sequences is outside the expected range. The entry is deleted.
MI0014371 bmo-mir-3304b MI0014371 This candidate Bombyx sequence maps many times to the genome, and is lacking miR* evidence, so is deemed to be low confidence and is removed.
MI0012384 bmo-mir-2806-1 MI0012384 This candidate Bombyx sequence maps many times to the genome, and is lacking miR* evidence, so is deemed to be low confidence and is removed.
MI0012202 bmo-mir-2750 MI0012202 This candidate Bombyx sequence maps many times to the genome, and is lacking miR* evidence, so is deemed to be low confidence and is removed.
MI0012178 bmo-mir-2730 MI0012178 This candidate Bombyx sequence maps many times to the genome, and is lacking miR* evidence, so is deemed to be low confidence and is removed.
MI0014370 bmo-mir-3313 MI0014370 This candidate Bombyx sequence maps many times to the genome, and is lacking miR* evidence, so is deemed to be low confidence and is removed.
MI0014378 bmo-mir-3320 MI0014378 This candidate Bombyx sequence maps many times to the genome, and is lacking miR* evidence, so is deemed to be low confidence and is removed.
MI0014357 bmo-mir-3300 MI0014357 This candidate Bombyx sequence maps many times to the genome, and is lacking miR* evidence, so is deemed to be low confidence and is removed.
MI0014404 bmo-mir-3346 MI0014404 This candidate Bombyx sequence maps many times to the genome, and is lacking miR* evidence, so is deemed to be low confidence and is removed.
MI0014389 bmo-mir-3331 MI0014389 This candidate Bombyx sequence maps many times to the genome, and is lacking miR* evidence, so is deemed to be low confidence and is removed.
MI0014407 bmo-mir-3349 MI0014407 This candidate Bombyx sequence maps many times to the genome, and is lacking miR* evidence, so is deemed to be low confidence and is removed.
MI0012398 bmo-mir-2814-1 MI0012398 This candidate Bombyx sequence maps many times to the genome, and is lacking miR* evidence, so is deemed to be low confidence and is removed.
MI0014399 bmo-mir-3341 MI0014399 This candidate Bombyx sequence maps many times to the genome, and is lacking miR* evidence, so is deemed to be low confidence and is removed.
MI0010755 mmu-mir-2142 MI0010755 mir-2142 is a fragment of 5S rRNA (Cei Abreu-Goodger, pers. comm.), so is removed from the database.
MI0012251 dpu-mir-87 MI0012251 The Daphnia mir-87 hairpin reported in Wheeler et al. is Drosophila melanogaster sequence. The Daphnia entry is removed.
MI0012641 bta-mir-9-3 MI0009912 bta-mir-9-3 maps to the same location in the genome assembly as mir-9-1, so is removed.
MI0013251 zma-MIR160h MI0001468 zma-MIR160h is a duplicate of zma-MIR160b, so is removed.
MI0012654 eca-mir-204a MI0012657 eca-mir-204a is a duplicate of mir-211 and is removed.
MI0001253 gga-mir-124b-2 MI0001252 mir-124b maps to just one location in the WashU 2.0 assembly, so the entries are merged.
MI0006985 gga-mir-33-2 MI0001170 mir-33 maps to just one location in the WashU 2.0 genome assembly, so entries -1 and -2 are merged.
MI0001284 gga-mir-218-3 MI0001212 mir-218-3 maps to the same locus as mir-218-1, so is removed
MI0006500 vvi-MIR160e MI0006497 vvi-MIR160e maps to the same genomic location as MIR160b, so is removed.
MI0007957 vvi-MIR397b MI0007956 vvi-MIR397b maps to the same genomic location as MIR397a, so is removed.
MI0006582 vvi-MIR535c MI0006581 This sequence maps to the same genomic location as MIR535b, so is removed.
MI0006584 vvi-MIR535e MI0006583 This sequence maps to the same genomic location as MIR535d, so is removed.
MI0013754 tgu-mir-2990 MI0013711 tgu-mir-2990 is the miR* sequence from the mir-128-2 hairpin. The entries are merged.
MI0001890 dre-mir-10d-2 MI0001889 dre-mir-10d-1 and mir-10d-2 map to the same locus, so are merged.
MI0014218 hsa-mir-3180-4 MI0014214 mir-3180 maps to 3 loci in the GRCh37 genome assembly. The existing 6 entries are collapsed to 3.
MI0014219 hsa-mir-3180-5 MI0014215 mir-3180 maps to 3 loci in the GRCh37 genome assembly. The existing 6 entries are collapsed to 3.
MI0014220 hsa-mir-3180-6 MI0014217 mir-3180 maps to 3 loci in the GRCh37 genome assembly. The existing 6 entries are collapsed to 3.
MI0001727 hsa-mir-453 MI0014206 miR-453 is processed from the 5p arm of mir-323b. The entries are merged.
MI0010021 bfl-mir-79 MI0010520 bfl-miR-79 is processed from the 3p arm of the mir-9 hairpins. Entries merged.
MI0014708 aae-mir-309a-1 MI0013477 This entry is a duplicate of MI0013477, so is removed.
MI0013525 aae-mir-309a-2 MI0013478 This entry is a duplicate of MI0013478, so is removed.
MI0004114 hsa-mir-P989 MI0016008 Candidate Berezikov sequence validated by Witten et al.
MI0004629 mmu-mir-P989 MI0016008 Candidate Berezikov sequence validated by Witten et al.
MI0014149 hsa-mir-3130-3 MI0014147 mir-3130-3 is redundant with mir-3130-1, so is removed.
MI0014150 hsa-mir-3130-4 MI0014148 mir-3130-4 is redundant with mir-3130-2, so is removed.
MI0000297 hsa-mir-220a MI0001386 mir-220 was predicted computationally by the Bartel group, and expression demonstrated in zebrafish (Lim et al, PMID:12624257). Expression of mir-220 has never been demonstrated in any other animal, but annotation was transferred to other vertebrates by similarity. Subsequent work strongly suggests that mir-220 is not a miRNA (Chiang et al, PMID:20413612), and it is therefore withdrawn by the authors and all mir-220 sequences are deleted from miRBase.
MI0002887 mml-mir-220a MI0001386 mir-220 was predicted computationally by the Bartel group, and expression demonstrated in zebrafish (Lim et al, PMID:12624257). Expression of mir-220 has never been demonstrated in any other animal, but annotation was transferred to other vertebrates by similarity. Subsequent work strongly suggests that mir-220 is not a miRNA (Chiang et al, PMID:20413612), and it is therefore withdrawn by the authors and all mir-220 sequences are deleted from miRBase.
MI0002888 ptr-mir-220a MI0001386 mir-220 was predicted computationally by the Bartel group, and expression demonstrated in zebrafish (Lim et al, PMID:12624257). Expression of mir-220 has never been demonstrated in any other animal, but annotation was transferred to other vertebrates by similarity. Subsequent work strongly suggests that mir-220 is not a miRNA (Chiang et al, PMID:20413612), and it is therefore withdrawn by the authors and all mir-220 sequences are deleted from miRBase.
MI0005529 hsa-mir-220b MI0001386 mir-220 was predicted computationally by the Bartel group, and expression demonstrated in zebrafish (Lim et al, PMID:12624257). Expression of mir-220 has never been demonstrated in any other animal, but annotation was transferred to other vertebrates by similarity. Subsequent work strongly suggests that mir-220 is not a miRNA (Chiang et al, PMID:20413612), and it is therefore withdrawn by the authors and all mir-220 sequences are deleted from miRBase.
MI0005536 hsa-mir-220c MI0001386 mir-220 was predicted computationally by the Bartel group, and expression demonstrated in zebrafish (Lim et al, PMID:12624257). Expression of mir-220 has never been demonstrated in any other animal, but annotation was transferred to other vertebrates by similarity. Subsequent work strongly suggests that mir-220 is not a miRNA (Chiang et al, PMID:20413612), and it is therefore withdrawn by the authors and all mir-220 sequences are deleted from miRBase.
MI0007677 mml-mir-220b MI0001386 mir-220 was predicted computationally by the Bartel group, and expression demonstrated in zebrafish (Lim et al, PMID:12624257). Expression of mir-220 has never been demonstrated in any other animal, but annotation was transferred to other vertebrates by similarity. Subsequent work strongly suggests that mir-220 is not a miRNA (Chiang et al, PMID:20413612), and it is therefore withdrawn by the authors and all mir-220 sequences are deleted from miRBase.
MI0007678 mml-mir-220c MI0001386 mir-220 was predicted computationally by the Bartel group, and expression demonstrated in zebrafish (Lim et al, PMID:12624257). Expression of mir-220 has never been demonstrated in any other animal, but annotation was transferred to other vertebrates by similarity. Subsequent work strongly suggests that mir-220 is not a miRNA (Chiang et al, PMID:20413612), and it is therefore withdrawn by the authors and all mir-220 sequences are deleted from miRBase.
MI0007679 mml-mir-220d MI0001386 mir-220 was predicted computationally by the Bartel group, and expression demonstrated in zebrafish (Lim et al, PMID:12624257). Expression of mir-220 has never been demonstrated in any other animal, but annotation was transferred to other vertebrates by similarity. Subsequent work strongly suggests that mir-220 is not a miRNA (Chiang et al, PMID:20413612), and it is therefore withdrawn by the authors and all mir-220 sequences are deleted from miRBase.
MI0008381 xla-mir-220c MI0001386 mir-220 was predicted computationally by the Bartel group, and expression demonstrated in zebrafish (Lim et al, PMID:12624257). Expression of mir-220 has never been demonstrated in any other animal, but annotation was transferred to other vertebrates by similarity. Subsequent work strongly suggests that mir-220 is not a miRNA (Chiang et al, PMID:20413612), and it is therefore withdrawn by the authors and all mir-220 sequences are deleted from miRBase.
MI0008586 ptr-mir-220b MI0001386 mir-220 was predicted computationally by the Bartel group, and expression demonstrated in zebrafish (Lim et al, PMID:12624257). Expression of mir-220 has never been demonstrated in any other animal, but annotation was transferred to other vertebrates by similarity. Subsequent work strongly suggests that mir-220 is not a miRNA (Chiang et al, PMID:20413612), and it is therefore withdrawn by the authors and all mir-220 sequences are deleted from miRBase.
MI0010380 cfa-mir-220b MI0001386 mir-220 was predicted computationally by the Bartel group, and expression demonstrated in zebrafish (Lim et al, PMID:12624257). Expression of mir-220 has never been demonstrated in any other animal, but annotation was transferred to other vertebrates by similarity. Subsequent work strongly suggests that mir-220 is not a miRNA (Chiang et al, PMID:20413612), and it is therefore withdrawn by the authors and all mir-220 sequences are deleted from miRBase.
MI0010381 cfa-mir-220a MI0001386 mir-220 was predicted computationally by the Bartel group, and expression demonstrated in zebrafish (Lim et al, PMID:12624257). Expression of mir-220 has never been demonstrated in any other animal, but annotation was transferred to other vertebrates by similarity. Subsequent work strongly suggests that mir-220 is not a miRNA (Chiang et al, PMID:20413612), and it is therefore withdrawn by the authors and all mir-220 sequences are deleted from miRBase.
MI0010442 bta-mir-220d MI0001386 mir-220 was predicted computationally by the Bartel group, and expression demonstrated in zebrafish (Lim et al, PMID:12624257). Expression of mir-220 has never been demonstrated in any other animal, but annotation was transferred to other vertebrates by similarity. Subsequent work strongly suggests that mir-220 is not a miRNA (Chiang et al, PMID:20413612), and it is therefore withdrawn by the authors and all mir-220 sequences are deleted from miRBase.
MI0010448 bta-mir-220e MI0001386 mir-220 was predicted computationally by the Bartel group, and expression demonstrated in zebrafish (Lim et al, PMID:12624257). Expression of mir-220 has never been demonstrated in any other animal, but annotation was transferred to other vertebrates by similarity. Subsequent work strongly suggests that mir-220 is not a miRNA (Chiang et al, PMID:20413612), and it is therefore withdrawn by the authors and all mir-220 sequences are deleted from miRBase.
MI0010449 bta-mir-220c-2 MI0001386 mir-220 was predicted computationally by the Bartel group, and expression demonstrated in zebrafish (Lim et al, PMID:12624257). Expression of mir-220 has never been demonstrated in any other animal, but annotation was transferred to other vertebrates by similarity. Subsequent work strongly suggests that mir-220 is not a miRNA (Chiang et al, PMID:20413612), and it is therefore withdrawn by the authors and all mir-220 sequences are deleted from miRBase.
MI0010450 bta-mir-220b MI0001386 mir-220 was predicted computationally by the Bartel group, and expression demonstrated in zebrafish (Lim et al, PMID:12624257). Expression of mir-220 has never been demonstrated in any other animal, but annotation was transferred to other vertebrates by similarity. Subsequent work strongly suggests that mir-220 is not a miRNA (Chiang et al, PMID:20413612), and it is therefore withdrawn by the authors and all mir-220 sequences are deleted from miRBase.
MI0010451 bta-mir-220c-1 MI0001386 mir-220 was predicted computationally by the Bartel group, and expression demonstrated in zebrafish (Lim et al, PMID:12624257). Expression of mir-220 has never been demonstrated in any other animal, but annotation was transferred to other vertebrates by similarity. Subsequent work strongly suggests that mir-220 is not a miRNA (Chiang et al, PMID:20413612), and it is therefore withdrawn by the authors and all mir-220 sequences are deleted from miRBase.
MI0010461 bta-mir-220a MI0001386 mir-220 was predicted computationally by the Bartel group, and expression demonstrated in zebrafish (Lim et al, PMID:12624257). Expression of mir-220 has never been demonstrated in any other animal, but annotation was transferred to other vertebrates by similarity. Subsequent work strongly suggests that mir-220 is not a miRNA (Chiang et al, PMID:20413612), and it is therefore withdrawn by the authors and all mir-220 sequences are deleted from miRBase.
MI0012588 rno-mir-220-1 MI0001386 mir-220 was predicted computationally by the Bartel group, and expression demonstrated in zebrafish (Lim et al, PMID:12624257). Expression of mir-220 has never been demonstrated in any other animal, but annotation was transferred to other vertebrates by similarity. Subsequent work strongly suggests that mir-220 is not a miRNA (Chiang et al, PMID:20413612), and it is therefore withdrawn by the authors and all mir-220 sequences are deleted from miRBase.
MI0012847 eca-mir-220b MI0001386 mir-220 was predicted computationally by the Bartel group, and expression demonstrated in zebrafish (Lim et al, PMID:12624257). Expression of mir-220 has never been demonstrated in any other animal, but annotation was transferred to other vertebrates by similarity. Subsequent work strongly suggests that mir-220 is not a miRNA (Chiang et al, PMID:20413612), and it is therefore withdrawn by the authors and all mir-220 sequences are deleted from miRBase.
MI0012848 eca-mir-220b-2 MI0001386 mir-220 was predicted computationally by the Bartel group, and expression demonstrated in zebrafish (Lim et al, PMID:12624257). Expression of mir-220 has never been demonstrated in any other animal, but annotation was transferred to other vertebrates by similarity. Subsequent work strongly suggests that mir-220 is not a miRNA (Chiang et al, PMID:20413612), and it is therefore withdrawn by the authors and all mir-220 sequences are deleted from miRBase.
MI0014870 ppy-mir-220a MI0001386 mir-220 was predicted computationally by the Bartel group, and expression demonstrated in zebrafish (Lim et al, PMID:12624257). Expression of mir-220 has never been demonstrated in any other animal, but annotation was transferred to other vertebrates by similarity. Subsequent work strongly suggests that mir-220 is not a miRNA (Chiang et al, PMID:20413612), and it is therefore withdrawn by the authors and all mir-220 sequences are deleted from miRBase.
MI0014871 ppy-mir-220b MI0001386 mir-220 was predicted computationally by the Bartel group, and expression demonstrated in zebrafish (Lim et al, PMID:12624257). Expression of mir-220 has never been demonstrated in any other animal, but annotation was transferred to other vertebrates by similarity. Subsequent work strongly suggests that mir-220 is not a miRNA (Chiang et al, PMID:20413612), and it is therefore withdrawn by the authors and all mir-220 sequences are deleted from miRBase.
MI0014872 ppy-mir-220c MI0001386 mir-220 was predicted computationally by the Bartel group, and expression demonstrated in zebrafish (Lim et al, PMID:12624257). Expression of mir-220 has never been demonstrated in any other animal, but annotation was transferred to other vertebrates by similarity. Subsequent work strongly suggests that mir-220 is not a miRNA (Chiang et al, PMID:20413612), and it is therefore withdrawn by the authors and all mir-220 sequences are deleted from miRBase.
MI0015967 rno-mir-220-2 MI0001386 mir-220 was predicted computationally by the Bartel group, and expression demonstrated in zebrafish (Lim et al, PMID:12624257). Expression of mir-220 has never been demonstrated in any other animal, but annotation was transferred to other vertebrates by similarity. Subsequent work strongly suggests that mir-220 is not a miRNA (Chiang et al, PMID:20413612), and it is therefore withdrawn by the authors and all mir-220 sequences are deleted from miRBase.
MI0001386 dre-mir-220 MI0001386 mir-220 was predicted computationally by the Bartel group, and expression demonstrated in zebrafish (Lim et al, PMID:12624257). Expression of mir-220 has never been demonstrated in any other animal, but annotation was transferred to other vertebrates by similarity. Subsequent work strongly suggests that mir-220 is not a miRNA (Chiang et al, PMID:20413612), and it is therefore withdrawn by the authors and all mir-220 sequences are deleted from miRBase.
MI0002889 ggo-mir-220 MI0001386 mir-220 was predicted computationally by the Bartel group, and expression demonstrated in zebrafish (Lim et al, PMID:12624257). Expression of mir-220 has never been demonstrated in any other animal, but annotation was transferred to other vertebrates by similarity. Subsequent work strongly suggests that mir-220 is not a miRNA (Chiang et al, PMID:20413612), and it is therefore withdrawn by the authors and all mir-220 sequences are deleted from miRBase.
MI0002890 mne-mir-220 MI0001386 mir-220 was predicted computationally by the Bartel group, and expression demonstrated in zebrafish (Lim et al, PMID:12624257). Expression of mir-220 has never been demonstrated in any other animal, but annotation was transferred to other vertebrates by similarity. Subsequent work strongly suggests that mir-220 is not a miRNA (Chiang et al, PMID:20413612), and it is therefore withdrawn by the authors and all mir-220 sequences are deleted from miRBase.
MI0002891 ppa-mir-220 MI0001386 mir-220 was predicted computationally by the Bartel group, and expression demonstrated in zebrafish (Lim et al, PMID:12624257). Expression of mir-220 has never been demonstrated in any other animal, but annotation was transferred to other vertebrates by similarity. Subsequent work strongly suggests that mir-220 is not a miRNA (Chiang et al, PMID:20413612), and it is therefore withdrawn by the authors and all mir-220 sequences are deleted from miRBase.
MI0005487 mmu-mir-220 MI0001386 mir-220 was predicted computationally by the Bartel group, and expression demonstrated in zebrafish (Lim et al, PMID:12624257). Expression of mir-220 has never been demonstrated in any other animal, but annotation was transferred to other vertebrates by similarity. Subsequent work strongly suggests that mir-220 is not a miRNA (Chiang et al, PMID:20413612), and it is therefore withdrawn by the authors and all mir-220 sequences are deleted from miRBase.
MI0006441 hsa-mir-1308 MI0006441 The mature miR-1308 is a fragment of a tRNA, and is therefore removed.
MI0013116 ssc-mir-1308 MI0013116 The mature miR-1308 is a fragment of a tRNA, and is therefore removed.
MI0012639 peu-MIR2915 MI0012639 The mature miR2915 is a fragment of a tRNA, and is therefore removed.
MI0014126 oar-mir-3114 MI0014126 The mature miR-3114 is a fragment of a tRNA, and is therefore removed.
MI0015942 bta-mir-3114 MI0015942 The mature miR-3114 is a fragment of a tRNA, and is therefore removed.
MI0007783 mml-mir-512-2 MI0007782 Previously annotated mir-512-1 and mir-512-2 map to same location in the MMUL1.0 genome assembly.
MI0001911 dre-mir-22a-2 MI0001910 Previously annotated mir-22a-1 and mir-22a-2 map to same location in the Zv8 genome assembly.
MI0002043 dre-mir-204-3 MI0002042 Previously annotated mir-204-2 and mir-204-3 map to same location in the Zv8 genome assembly.
MI0007781 mml-mir-511-2 MI0007780 Previously annotated mir-511-1 and mir-511-2 map to same location in the MMUL1.0 genome assembly.
MI0007784 mml-mir-514-2 MI0006621 Previously annotated mir-514-1 and mir-514-2 map to same location in the MMUL1.0 genome assembly.
MI0007788 mml-mir-517b MI0007787 Previously annotated mir-517a and mir-517b map to same location in the MMUL1.0 genome assembly.
MI0007811 mml-mir-523c-1 MI0007796 Two annotated mir-523c sequences map to the location as mir-519b in the MMUL1.0 genome assembly. The mir-523c loci are removed.
MI0007812 mml-mir-523c-2 MI0007796 Two annotated mir-523c sequences map to the location as mir-519b in the MMUL1.0 genome assembly. The mir-523c loci are removed.
MI0007800 mml-mir-520b MI0007795 Three annotated mir-520 sequences map to the location as mir-519a in the MMUL1.0 genome assembly. The mir-520 loci are removed.
MI0007801 mml-mir-520c MI0007795 Three annotated mir-520 sequences map to the location as mir-519a in the MMUL1.0 genome assembly. The mir-520 loci are removed.
MI0007803 mml-mir-520e MI0007795 Three annotated mir-520 sequences map to the location as mir-519a in the MMUL1.0 genome assembly. The mir-520 loci are removed.
MI0007804 mml-mir-520f MI0007795 Three annotated mir-520 sequences map to the location as mir-519a in the MMUL1.0 genome assembly. The mir-520 loci are removed.
MI0007806 mml-mir-520h MI0007798 mir-520h maps to the same location as mir-519d in the MMUL1.0 genome assembly.
MI0007808 mml-mir-522 MI0007793 mir-522 maps to the same location as mir-518e in the MMUL1.0 genome assembly.
MI0007802 mml-mir-520d MI0007789 mir-520d maps to the same location as mir-518a in the MMUL1.0 genome assembly.
MI0007792 mml-mir-518d MI0007791 mir-518d maps to the same location as mir-518c in the MMUL1.0 genome assembly.
MI0010738 mmu-mir-2133-1 MI0010738 The mature sequence annotated as miR-2133 is a fragment of SSU rRNA.
MI0010739 mmu-mir-2133-2 MI0010739 The mature sequence annotated as miR-2133 is a fragment of SSU rRNA.
MI0012638 peu-MIR2914 MI0012638 The mature sequence annotated as miR2914 is a fragment of SSU rRNA.
MI0013057 bta-mir-2884 MI0013057 The mature sequence annotated as miR-2884 is a fragment of SSU rRNA.
MI0012633 peu-MIR2910 MI0012633 The mature sequence annotated as miR2910 is a fragment of LSU rRNA.
MI0008194 hsa-mir-1826 MI0008194 The annotated mature sequence is a fragment of 5.8S rRNA.
MI0005527 hsa-mir-886 MI0005527 The annotated mature sequence is a fragment of Vault RNA (Stadler et al. PMID:19491402).
MI0007920 mml-mir-886 MI0007920 The annotated mature sequence is a fragment of Vault RNA (Stadler et al. PMID:19491402).
MI0008868 ptr-mir-886 MI0008868 The annotated mature sequence is a fragment of Vault RNA (Stadler et al. PMID:19491402).
MI0015156 ppy-mir-886 MI0015156 The annotated mature sequence is a fragment of Vault RNA (Stadler et al. PMID:19491402).
MI0009985 hsa-mir-1975 MI0009985 The annotated mature sequence is a fragment of Y RNA (Meiri et al, PMID:20483914).
MI0006333 hsa-mir-1201 MI0006333 The miRNA overlaps an annotated snoRNA (SNORD126, Rfam 10.0, Infernal 1.0). The patterns of sequence conservation support the snoRNA annotation, so this sequence is likely not a miRNA.
MI0008423 ptr-mir-1201 MI0008423 The miRNA overlaps an annotated snoRNA (SNORD126, Rfam 10.0, Infernal 1.0). The patterns of sequence conservation support the snoRNA annotation, so this sequence is likely not a miRNA.
MI0015187 ppy-mir-1201 MI0015187 The miRNA overlaps an annotated snoRNA (SNORD126, Rfam 10.0, Infernal 1.0). The patterns of sequence conservation support the snoRNA annotation, so this sequence is likely not a miRNA.
MI0006393 hsa-mir-1259 MI0006393 The miRNA overlaps an annotated snoRNA (SNORD12, Rfam 10.0, Infernal 1.0). The patterns of sequence conservation support the snoRNA annotation, so this sequence is likely not a miRNA.
MI0008463 ptr-mir-1259 MI0008463 The miRNA overlaps an annotated snoRNA (SNORD12, Rfam 10.0, Infernal 1.0). The patterns of sequence conservation support the snoRNA annotation, so this sequence is likely not a miRNA.
MI0014203 hsa-mir-3172 MI0014203 The mature miR-3172 is a fragment of a predicted tRNA (Rfam 10.0, Infernal 1.0).
MI0009989 hsa-mir-1979 MI0009989 The mature miR-1979 is a fragment of a Y RNA (Meiri et al, PMID:20483914).
MI0010737 mmu-mir-2132 MI0010737 The annotated miRNA sequence is a fragment of rRNA (Chiang et al, PMID:20413612).
MI0010740 mmu-mir-2134-1 MI0010740 The annotated miRNA sequence is a fragment of rRNA (Chiang et al, PMID:20413612).
MI0010741 mmu-mir-2134-2 MI0010741 The annotated miRNA sequence is a fragment of rRNA (Chiang et al, PMID:20413612).
MI0010742 mmu-mir-2134-3 MI0010742 The annotated miRNA sequence is a fragment of rRNA (Chiang et al, PMID:20413612).
MI0010743 mmu-mir-2134-4 MI0010743 The annotated miRNA sequence is a fragment of rRNA (Chiang et al, PMID:20413612).
MI0010744 mmu-mir-2135-1 MI0010744 The annotated miRNA sequence is a fragment of rRNA (Chiang et al, PMID:20413612).
MI0010745 mmu-mir-2135-4 MI0010745 The annotated miRNA sequence is a fragment of rRNA (Chiang et al, PMID:20413612).
MI0010746 mmu-mir-2135-5 MI0010746 The annotated miRNA sequence is a fragment of rRNA (Chiang et al, PMID:20413612).
MI0010747 mmu-mir-2135-2 MI0010747 The annotated miRNA sequence is a fragment of rRNA (Chiang et al, PMID:20413612).
MI0010748 mmu-mir-2135-3 MI0010748 The annotated miRNA sequence is a fragment of rRNA (Chiang et al, PMID:20413612).
MI0010751 mmu-mir-2138 MI0010751 The annotated miRNA sequence is a fragment of rRNA (Chiang et al, PMID:20413612).
MI0013182 mmu-mir-2134-5 MI0013182 The annotated miRNA sequence is a fragment of rRNA (Chiang et al, PMID:20413612).
MI0013183 mmu-mir-2134-6 MI0013183 The annotated miRNA sequence is a fragment of rRNA (Chiang et al, PMID:20413612).
MI0010753 mmu-mir-2140 MI0010753 The annotated miRNA sequence is a fragment of rRNA (Chiang et al, PMID:20413612).
MI0010754 mmu-mir-2141 MI0010754 The annotated miRNA sequence is a fragment of rRNA (Chiang et al, PMID:20413612).
MI0010762 mmu-mir-2146 MI0010762 The annotated miRNA sequence is a fragment of rRNA (Chiang et al, PMID:20413612).
MI0004654 mmu-mir-689-1 MI0004654 The annotated miRNA sequence is a fragment of rRNA (Chiang et al, PMID:20413612).
MI0004655 mmu-mir-689-2 MI0004655 The annotated miRNA sequence is a fragment of rRNA (Chiang et al, PMID:20413612).
MI0015998 hsa-mir-3608 MI0015998 This sequence overlaps Vault RNA (Rfam 10.0, Infernal 1.0), therefore is likely not a miRNA.
MI0005680 ppt-MIR896 MI0005680 The annotated mature miR896 sequence is a fragment of a tRNA (Rfam 10.0, Infernal 1.0, tRNAscan-SE).
MI0015716 cin-mir-4161 MI0015713 cin-mir-4158 and cin-mir-4161 are alternative hairpins for the same mature miRNA. The latter is removed.
MI0012586 rno-mir-513 MI0015460 mir-3585 is a duplicate of mir-513. The entries are merged.
MI0014709 aae-mir-9c MI0013436 aae-mir-9 and aae-mir-9c are duplicate entries, so are merged.
MI0002404 mmu-mir-469 MI0002404 The pattern of deep sequencing reads from this putative mir-469 locus is not consistent with miRNA processing -- many reads overlap the loop region, and are tiled across the whole hairpin (Chiang et al. Genes Dev. 2010).
MI0002399 mmu-mir-464 MI0002399 The pattern of deep sequencing reads from the putative mir-464 locus is not consistent with miRNA processing -- many reads overlap the loop region, and are tiled across the whole hairpin (Chiang et al. Genes Dev. 2010).
MI0009933 mmu-mir-1944 MI0009933 The pattern of deep sequencing reads from the putative mir-1944 locus is not consistent with miRNA processing -- many reads overlap the loop region, and are tiled across the whole hairpin (Chiang et al. Genes Dev. 2010).
MI0010760 mmu-mir-2145-1 MI0010760 The sequence annotated as mature miR-2145 is a fragment of 5S rRNA (Chiang et al. Genes Dev. 2010), so is removed from the database.
MI0010761 mmu-mir-2145-2 MI0010761 The sequence annotated as mature miR-2145 is a fragment of 5S rRNA (Chiang et al. Genes Dev. 2010), so is removed from the database.
MI0009928 mmu-mir-1939 MI0009928 The sequence annotated as mature miR-1939 is a fragment of mouse Gly-tRNA, and is therefore not a likely to be a bona fide miRNA.
MI0009956 mmu-mir-1959 MI0009956 The sequence annotated as mature miR-1959 is a fragment of tRNA, and is therefore not a likely to be a bona fide miRNA (Peterson K, pers. comm.).
MI0009926 mmu-mir-1937a MI0009926 The sequence annotated as mature miR-1937 is a fragment of tRNA, and is therefore not a likely to be a bona fide miRNA (Peterson K, pers. comm.).
MI0009938 mmu-mir-1937b-1 MI0009938 The sequence annotated as mature miR-1937 is a fragment of tRNA, and is therefore not a likely to be a bona fide miRNA (Peterson K, pers. comm.).
MI0009953 mmu-mir-1937c MI0009953 The sequence annotated as mature miR-1937 is a fragment of tRNA, and is therefore not a likely to be a bona fide miRNA (Peterson K, pers. comm.).
MI0014698 mmu-mir-1937b-2 MI0014698 The sequence annotated as mature miR-1937 is a fragment of tRNA, and is therefore not a likely to be a bona fide miRNA (Peterson K, pers. comm.).
MI0014700 mmu-mir-1937b-3 MI0014700 The sequence annotated as mature miR-1937 is a fragment of tRNA, and is therefore not a likely to be a bona fide miRNA (Peterson K, pers. comm.).
MI0014702 mmu-mir-1937b-4 MI0014702 The sequence annotated as mature miR-1937 is a fragment of tRNA, and is therefore not a likely to be a bona fide miRNA (Peterson K, pers. comm.).
MI0014703 mmu-mir-1937b-5 MI0014703 The sequence annotated as mature miR-1937 is a fragment of tRNA, and is therefore not a likely to be a bona fide miRNA (Peterson K, pers. comm.).
MI0004700 mmu-mir-715 MI0004700 The pattern of deep sequencing reads from the putative mir-715 locus is not consistent with miRNA processing -- many reads overlap the loop region, and are tiled across the whole hairpin (Chiang et al. Genes Dev. 2010). Calabrese et al. (2007) also challenge this annotation, suggesting that it derives from the pre-rRNA transcript.
MI0006410 hsa-mir-1274a MI0006410 The putative mature miR-1274 sequence is a fragment of a Lys tRNA (Schopman et al. 2010, PMID:20818168).
MI0006427 hsa-mir-1274b MI0006427 The putative mature miR-1274 sequence is a fragment of a Lys tRNA (Schopman et al. 2010, PMID:20818168).
MI0008475 ptr-mir-1274b MI0008475 The putative mature miR-1274 sequence is a fragment of a Lys tRNA (Schopman et al. 2010, PMID:20818168).
MI0009969 mmu-mir-1274a MI0009969 The putative mature miR-1274 sequence is a fragment of a Lys tRNA (Schopman et al. 2010, PMID:20818168).
MI0015231 ppy-mir-1274a MI0015231 The putative mature miR-1274 sequence is a fragment of a Lys tRNA (Schopman et al. 2010, PMID:20818168).
MI0015232 ppy-mir-1274b MI0015232 The putative mature miR-1274 sequence is a fragment of a Lys tRNA (Schopman et al. 2010, PMID:20818168).
MI0011563 bdi-MIR160 MI0011563 MIR160 does not map to the JGI 1.0 genome, so is removed.
MI0011569 bdi-MIR171d MI0011569 MIR171d does not map to the JGI 1.0 genome, so is removed.
MI0011560 bdi-MIR408 MI0011560 MIR408 does not map to the JGI 1.0 genome, so is removed.
MI0011564 bdi-MIR169a MI0011564 MIR169a does not map to the JGI 1.0 genome, so is removed.
MI0013365 ath-MIR2935 MI0013365 The pattern of reads from deep sequencing experiments does not support a miRNA annotation (Kozomara and Griffiths-Jones, NAR 2011 39:D152-D157)
MI0018198 ame-mir-375b MI0016245 mir-750 and mir-375b identified by Chen et al. map to the same locus. The entries are therefore merged.
MI0004423 mmu-mir-P1130 MI0019189 Superceded by entry mmu-mir-5621
MI0012527 mdo-mir-739 MI0012527 mir-739 appears to be a fragment of rRNA, and so is removed from the database
MI0015970 dre-let-7e-2 MI0001871 Two annotated let-7e loci collapse to a single locus in the Zv9 assembly.
MI0001985 dre-mir-130a-2 MI0001984 Two annotated mir-130a loci collapse to a single locus in the Zv9 assembly.
MI0001998 dre-mir-135c-3 MI0001997 Three annotated mir-135c loci collapse to two loci in the Zv9 assembly.
MI0002014 dre-mir-146b-2 MI0002013 Two annotated mir-146b loci collapse to a single locus in the Zv9 assembly.
MI0002031 dre-mir-193a-3 MI0002030 Three annotated mir-193a loci collapse to two in the Zv9 assembly.
MI0002047 dre-mir-216a-2 MI0001382 Two annotated mir-216a loci collapse to a single locus in the Zv9 assembly.
MI0002049 dre-mir-216b-2 MI0002048 Two annotated mir-216b loci collapse to a single locus in the Zv9 assembly.
MI0002050 dre-mir-217-2 MI0001383 Two annotated mir-217 loci collapse to a single locus in the Zv9 assembly.
MI0002066 dre-mir-338-4 MI0002064 Four annotated mir-338 loci collapse to two in the Zv9 assembly.
MI0002065 dre-mir-338-3 MI0002063 Four annotated mir-338 loci collapse to two in the Zv9 assembly.
MI0002071 dre-mir-365-4 MI0002070 Four annotated mir-365 loci collapse to three in the Zv9 assembly.
MI0002060 dre-mir-301a-2 MI0002059 Two annotated mir-301a loci collapse to one in the Zv9 assembly.
MI0003394 dre-mir-29a-2 MI0001938 Two annotated mir-29a loci collapse to one in the Zv9 assembly.
MI0001936 dre-mir-29b-3 MI0001934 Three annotated mir-29b loci collapse to two in the Zv9 assembly.
MI0002175 dre-mir-430j MI0002175 mir-430j is absent from the Zv9 assembly
MI0002101 dre-mir-430c-21 MI0001529 A number of mir-430c loci are merged in the Zv9 assembly
MI0002100 dre-mir-430c-20 MI0001529 A number of mir-430c loci are merged in the Zv9 assembly
MI0002099 dre-mir-430c-19 MI0001529 A number of mir-430c loci are merged in the Zv9 assembly
MI0002172 dre-mir-430b-21 MI0002149 Some mir-430 entries collapse in the Zv9 genome assembly, so are merged.
MI0002173 dre-mir-430b-22 MI0002158 Some mir-430 entries collapse in the Zv9 genome assembly, so are merged.
MI0002174 dre-mir-430b-23 MI0002170 Some mir-430 entries collapse in the Zv9 genome assembly, so are merged.
MI0002138 dre-mir-430a-23 MI0002131 Some mir-430 entries collapse in the Zv9 genome assembly, so are merged.
MI0002135 dre-mir-430a-22 MI0002120 Some mir-430 entries collapse in the Zv9 genome assembly, so are merged.
MI0002134 dre-mir-430a-21 MI0002111 Some mir-430 entries collapse in the Zv9 genome assembly, so are merged.
MI0002133 dre-mir-430a-20 MI0002111 Some mir-430 entries collapse in the Zv9 genome assembly, so are merged.
MI0002132 dre-mir-430a-19 MI0002126 Some mir-430 entries collapse in the Zv9 genome assembly, so are merged.
MI0013245 osa-MIR2906a MI0013245 The sequence annotated as miR2906 is a fragment of SRP RNA, so is removed.
MI0013246 osa-MIR2906b MI0013246 The sequence annotated as miR2906 is a fragment of SRP RNA, so is removed.
MI0016047 hsa-mir-3647 MI0016047 mir-3647 is a fragment of a snoRNA (SNORD111B -- Langenberger et al, DOI:10.1007/978-3-642-22825-4_1), so is removed.
MI0017669 bfl-mir-4896 MI0017669 mir-4896 is a fragment of U2 RNA.
MI0016446 smr-mir-3931 MI0018489 mir-3931 is a chelicerate-specific miRNA that was not cloned frm Strigamia in Rota-Stabelli et al. (Peterson K, pers. comm.).
MI0005490 mmu-mir-297a-5 MI0000397 miR-297a maps many times to the mouse genome. Sequences without support for mature miRNAs from both arms by deep sequencing are deleted.
MI0005491 mmu-mir-297a-6 MI0000397 miR-297a maps many times to the mouse genome. Sequences without support for mature miRNAs from both arms by deep sequencing are deleted.
MI0011685 dps-mir-2517a-4 MI0011725 Merge duplicate loci.
MI0001707 osa-MIR442 MI0001707 The pattern of reads that map to the MIR442 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0001704 osa-MIR441a MI0001704 The pattern of reads that map to the MIR441 loci from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0001705 osa-MIR441b MI0001705 The pattern of reads that map to the MIR441 loci from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0001706 osa-MIR441c MI0001706 The pattern of reads that map to the MIR441 loci from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0001718 osa-MIR446 MI0001718 The pattern of reads that map to the MIR446 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0010723 osa-MIR2125 MI0010723 The pattern of reads that map to the MIR2125 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0004678 mmu-mir-720 MI0004678 Schopman et al. show that the sequence annotated as miR-720 is likely to be a fragment of a tRNA, and so is removed from the database (RNA Biol. 2010 7:573-576).
MI0006654 hsa-mir-720 MI0006654 Schopman et al. show that the sequence annotated as miR-720 is likely to be a fragment of a tRNA, and so is removed from the database (RNA Biol. 2010 7:573-576).
MI0008855 ptr-mir-720 MI0008855 Schopman et al. show that the sequence annotated as miR-720 is likely to be a fragment of a tRNA, and so is removed from the database (RNA Biol. 2010 7:573-576).
MI0015141 ppy-mir-720 MI0015141 Schopman et al. show that the sequence annotated as miR-720 is likely to be a fragment of a tRNA, and so is removed from the database (RNA Biol. 2010 7:573-576).
MI0020554 cgr-mir-720 MI0020554 Schopman et al. show that the sequence annotated as miR-720 is likely to be a fragment of a tRNA, and so is removed from the database (RNA Biol. 2010 7:573-576).
MI0021124 bta-mir-720 MI0021124 Schopman et al. show that the sequence annotated as miR-720 is likely to be a fragment of a tRNA, and so is removed from the database (RNA Biol. 2010 7:573-576).
MI0006437 hsa-mir-1280 MI0006437 Schopman et al. show that the sequence annotated as miR-1280 is likely to be a fragment of a tRNA, and so is removed from the database (RNA Biol. 2010 7:573-576).
MI0008479 ptr-mir-1280 MI0008479 Schopman et al. show that the sequence annotated as miR-1280 is likely to be a fragment of a tRNA, and so is removed from the database (RNA Biol. 2010 7:573-576).
MI0015235 ppy-mir-1280 MI0015235 Schopman et al. show that the sequence annotated as miR-1280 is likely to be a fragment of a tRNA, and so is removed from the database (RNA Biol. 2010 7:573-576).
MI0001440 osa-MIR420 MI0001440 The pattern of reads that map to the MIR420 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005238 osa-MIR813 MI0005238 The pattern of reads that map to the MIR813 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0010724 osa-MIR2124h MI0010724 The pattern of reads that map to the MIR2124 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0010722 osa-MIR2124i MI0010722 The pattern of reads that map to the MIR2124 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0010721 osa-MIR2124g MI0010721 The pattern of reads that map to the MIR2124 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0010720 osa-MIR2124f MI0010720 The pattern of reads that map to the MIR2124 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0010719 osa-MIR2124e MI0010719 The pattern of reads that map to the MIR2124 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0010718 osa-MIR2124d MI0010718 The pattern of reads that map to the MIR2124 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0010717 osa-MIR2124c MI0010717 The pattern of reads that map to the MIR2124 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0010716 osa-MIR2124b MI0010716 The pattern of reads that map to the MIR2124 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0010715 osa-MIR2124a MI0010715 The pattern of reads that map to the MIR2124 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0001709 osa-MIR445a MI0001709 The pattern of reads that map to the MIR445 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0001710 osa-MIR445b MI0001710 The pattern of reads that map to the MIR445 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0001711 osa-MIR445c MI0001711 The pattern of reads that map to the MIR445 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0001712 osa-MIR445d MI0001712 The pattern of reads that map to the MIR445 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0001713 osa-MIR445e MI0001713 The pattern of reads that map to the MIR445 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0001714 osa-MIR445f MI0001714 The pattern of reads that map to the MIR445 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0001715 osa-MIR445g MI0001715 The pattern of reads that map to the MIR445 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0001716 osa-MIR445h MI0001716 The pattern of reads that map to the MIR445 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0001717 osa-MIR445i MI0001717 The pattern of reads that map to the MIR445 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005210 osa-MIR806a MI0005210 The pattern of reads that map to the MIR806 locus from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005211 osa-MIR806b MI0005211 The pattern of reads that map to the MIR806 locus from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005212 osa-MIR806c MI0005212 The pattern of reads that map to the MIR806 locus from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005213 osa-MIR806d MI0005213 The pattern of reads that map to the MIR806 locus from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005214 osa-MIR806e MI0005214 The pattern of reads that map to the MIR806 locus from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005215 osa-MIR806f MI0005215 The pattern of reads that map to the MIR806 locus from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005216 osa-MIR806g MI0005216 The pattern of reads that map to the MIR806 locus from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005217 osa-MIR806h MI0005217 The pattern of reads that map to the MIR806 locus from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0010712 osa-MIR2123a MI0010712 The pattern of reads that map to the MIR806/MIR2123 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0010713 osa-MIR2123b MI0010713 The pattern of reads that map to the MIR806/MIR2123 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0010714 osa-MIR2123c MI0010714 The pattern of reads that map to the MIR806/MIR2123 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0008246 osa-MIR1884a MI0008246 The pattern of reads that map to the MIR806/MIR1884 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0008281 osa-MIR1884b MI0008281 The pattern of reads that map to the MIR806/MIR1884 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005209 osa-MIR807a MI0005209 The pattern of reads that map to the MIR807 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005218 osa-MIR807b MI0005218 The pattern of reads that map to the MIR807 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005219 osa-MIR807c MI0005219 The pattern of reads that map to the MIR807 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005220 osa-MIR808 MI0005220 The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005221 osa-MIR809a MI0005221 The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005222 osa-MIR809b MI0005222 The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005223 osa-MIR809c MI0005223 The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005224 osa-MIR809d MI0005224 The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005225 osa-MIR809e MI0005225 The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005226 osa-MIR809f MI0005226 The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005227 osa-MIR809g MI0005227 The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005228 osa-MIR809h MI0005228 The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005252 osa-MIR819a MI0005252 The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005253 osa-MIR819b MI0005253 The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005254 osa-MIR819c MI0005254 The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005255 osa-MIR819d MI0005255 The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005256 osa-MIR819e MI0005256 The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005257 osa-MIR819f MI0005257 The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005258 osa-MIR819g MI0005258 The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005259 osa-MIR819h MI0005259 The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005260 osa-MIR819i MI0005260 The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005261 osa-MIR819j MI0005261 The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005262 osa-MIR819k MI0005262 The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0006188 tae-MIR1126 MI0006188 MIR1126 and MIR1132 are related to the MIR8080/809/819 family. The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0016744 hvu-MIR1126 MI0016744 MIR1126 and MIR1132 are related to the MIR8080/809/819 family. The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0006194 tae-MIR1132 MI0006194 MIR1126 and MIR1132 are related to the MIR8080/809/819 family. The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005230 osa-MIR811a MI0005230 The pattern of reads that map to the MIR811/MIR2862 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005231 osa-MIR811b MI0005231 The pattern of reads that map to the MIR811/MIR2862 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0005232 osa-MIR811c MI0005232 The pattern of reads that map to the MIR811/MIR2862 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0017250 osa-MIR811d MI0017250 The pattern of reads that map to the MIR811/MIR2862 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0013024 osa-MIR2862 MI0013024 The pattern of reads that map to the MIR811/MIR2862 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).
MI0014337 bmo-mir-3281 MI0014337 The pattern of reads from deep sequencing experiments that map to this locus does not support the annotation of mir-3281 as a microRNA. The entry is therefore removed from the database.
MI0014440 bmo-mir-3379 MI0014440 The pattern of reads from deep sequencing experiments that map to this locus does not support the annotation of mir-3379 as a microRNA. The entry is therefore removed from the database.
MI0021589 mmu-mir-6242 MI0021589 miR-6242 is a fragment of the precursor 45S rRNA, and so is removed from the database.
MI0010832 mmu-mir-2182 MI0010832 miR-2182 is a fragment of the precursor 45S rRNA, and so is removed from the database.
MI0019410 dme-mir-5613 MI0019410 The pattern of reads mapping to this locus from collated deep sequencing experiments is not consistent with microRNA processing by Drosha and Dicer. The sequence is therefore removed from miRBase.
MI0019411 dme-mir-5614 MI0019411 The pattern of reads mapping to this locus from collated deep sequencing experiments is not consistent with microRNA processing by Drosha and Dicer. The sequence is therefore removed from miRBase.
MI0018010 mmu-mir-5102 MI0018010 The sequence annotated as mir-5102 is 80% identical to an annotated 28S rRNA sequence (Refseq:NR_003279.1), and is therefore very unlikely to be a miRNA. The sequence is removed from the database.
MI0004496 mmu-mir-P1162 MI0004496 Delete Berezikov candidate
MI0003800 hsa-mir-P716 MI0003800 Berezikov RAKE candidate
MI0023505 hco-let-7 MI0020169 Likely not the true let-7 sequence (Winter AD, pers comm). Removed from the database in favour of the overlapping mir-5991 sequence.
MI0011537 bta-mir-2476 MI0011537 The genomic region flanking the predicted mir-2476 hairpin is annotated as a tRNA by both Rfam and tRNAscan-SE. The mature sequence also matches fragments of tRNAs from the SILVA database. The miRNA annotation is therefore removed from miRBase.
MI0017998 ssc-mir-2476a-1 MI0017998 The genomic region flanking the predicted mir-2476 hairpin is annotated as a tRNA by both Rfam and tRNAscan-SE. The mature sequence also matches fragments of tRNAs from the SILVA database. The miRNA annotation is therefore removed from miRBase.
MI0017999 ssc-mir-2476a-2 MI0017999 The genomic region flanking the predicted mir-2476 hairpin is annotated as a tRNA by both Rfam and tRNAscan-SE. The mature sequence also matches fragments of tRNAs from the SILVA database. The miRNA annotation is therefore removed from miRBase.
MI0018000 ssc-mir-2476a-3 MI0018000 The genomic region flanking the predicted mir-2476 hairpin is annotated as a tRNA by both Rfam and tRNAscan-SE. The mature sequence also matches fragments of tRNAs from the SILVA database. The miRNA annotation is therefore removed from miRBase.
MI0022165 ssc-mir-2476b-1 MI0022165 The genomic region flanking the predicted mir-2476 hairpin is annotated as a tRNA by both Rfam and tRNAscan-SE. The mature sequence also matches fragments of tRNAs from the SILVA database. The miRNA annotation is therefore removed from miRBase.
MI0022166 ssc-mir-2476b-2 MI0022166 The genomic region flanking the predicted mir-2476 hairpin is annotated as a tRNA by both Rfam and tRNAscan-SE. The mature sequence also matches fragments of tRNAs from the SILVA database. The miRNA annotation is therefore removed from miRBase.
MI0018020 mmu-mir-5111 MI0018020 The annotated mature miR-5111 sequence appears to be a fragment of tRNAs annotated in the SILVA database. The miRNA annotation is therefore removed from miRBase.
MI0019039 osa-MIR5520 MI0019039 The pattern of RNAseq reads mapped to this locus do not support the annotation of a microRNA, and the structure of the flanking regions is not a simple hairpin. The annotation is removed from miRBase.
MI0021722 gma-MIR6298 MI0021722 The mature sequence annotated as miR6298 appears to be a fragment of an Ala(TGC) tRNA, so is removed from the database.
MI0004550 mmu-mir-P864 MI0004550 Berezikov candidate
MI0013950 api-mir-971-2 MI0013949 Two previously annotated mir-971 entries map to the same locus in the AphidBase2 genome assembly, and so are merged.
MI0013978 api-mir-3034-2 MI0013977 Two previously annotated mir-3034 entries map to the same locus in the AphidBase2 genome assembly, and so are merged.
MI0013916 api-mir-210-2 MI0013915 Two previously annotated mir-210 entries map to the same locus in the AphidBase2 genome assembly, and so are merged.
MI0013952 api-mir-996-2 MI0013951 Two previously annotated mir-996 entries map to the same locus in the AphidBase2 genome assembly, and so are merged.
MI0013931 api-mir-307-2 MI0013930 Two previously annotated mir-307 entries map to the same locus in the AphidBase2 genome assembly, and so are merged.
MI0014014 api-mir-3015c-2 MI0014013 Two previously annotated mir-3015c entries map to the same locus in the AphidBase2 genome assembly, and so are merged.
MI0017890 ath-MIR5015b MI0017883 Two previously annotated MIR5015 entries map to the same locus in the TAIR10 genome assembly, and so are merged.
MI0017960 bdi-MIR5062b MI0017959 Two previously annotated MIR5062 entries map to the same locus in the v1.0 genome assembly, and so are merged.
MI0018217 bdi-MIR390b MI0018085 Two previously annotated MIR390 entries map to the same locus in the v1.0 genome assembly, and so are merged.
MI0018237 bdi-MIR396f MI0018125 Two previously annotated MIR396 (b and f) entries map to the same locus in the v1.0 genome assembly, and so are merged.
MI0018099 bdi-MIR397b MI0011565 Two previously annotated MIR397 entries map to the same locus in the v1.0 genome assembly, and so are merged.
MI0018228 bdi-MIR398c MI0018116 Two previously annotated MIR398 entries map to the same locus in the v1.0 genome assembly, and so are merged.
MI0018214 bdi-MIR164d MI0018094 Two previously annotated MIR164 entries map to the same locus in the v1.0 genome assembly, and so are merged.
MI0018218 bdi-MIR395i MI0018088 Two previously annotated MIR395 entries map to the same locus in the v1.0 genome assembly, and so are merged.
MI0017616 bfl-mir-4862b MI0017615 Two previously annotated mir-4862 entries map to the same locus in the JGI2.0 genome assembly, and so are merged.
MI0017655 bfl-mir-4885b MI0017654 Two previously annotated mir-4885 entries map to the same locus in the JGI2.0 genome assembly, and so are merged.
MI0017671 bfl-mir-4897b MI0017670 Two previously annotated mir-4897 entries map to the same locus in the JGI2.0 genome assembly, and so are merged.
MI0021698 gma-MIR166v MI0021698 The locus annotated as MIR166v is a low complexity sequence that maps many times to the genome, and the putative hairpin structure is not consistent with miRNA processing. The sequence is therefore removed from the database.
MI0022278 bta-mir-1839b MI0010473 Two previously annotated mir-1839 entries map to the same locus in the UMD3.1 genome assembly, and so are merged.
MI0012210 bta-mir-219-2 MI0009781 Two previously annotated mir-219 entries map to the same locus in the UMD3.1 genome assembly, and so are merged.
MI0022312 bta-mir-2285m-6 MI0022276 Two previously annotated mir-2285m entries map to the same locus in the UMD3.1 genome assembly, and so are merged.
MI0022316 bta-mir-2285m-7 MI0022309 Two previously annotated mir-2285m entries map to the same locus in the UMD3.1 genome assembly, and so are merged.
MI0011422 bta-mir-2384-2 MI0011421 Two previously annotated mir-2384 entries map to the same locus in the UMD3.1 genome assembly, and so are merged.
MI0011489 bta-mir-2424-2 MI0011474 Two previously annotated mir-2424 entries map to the same locus in the UMD3.1 genome assembly, and so are merged.
MI0013078 bta-mir-2902-2 MI0013077 Two previously annotated mir-2909 entries map to the same locus in the UMD3.1 genome assembly, and so are merged.
MI0011499 bta-mir-2445 MI0011499 The previously annotated mir-2445 sequence does not adopt a strong miRNA-like hairpin structure, and the mature sequence does not match exactly in the UMD3.1 genome assembly. The entry is therefore removed.
MI0015552 cin-mir-4010-2 MI0015551 Two previously annotated mir-4010 entries map to the same locus in the JGI2 genome assembly, and so are merged.
MI0015503 cin-mir-4000a-3 MI0015504 Three previously annotated mir-4000a entries map to two loci in the JGI2 genome assembly, and so are merged.
MI0013616 cqu-mir-1890-2 MI0013615 Two previously annotated mir-1890 entries map to a single locus in the CpipJ1 genome assembly, and so are merged.
MI0013595 cqu-mir-92-2 MI0013594 Two previously annotated mir-92 entries map to a single locus in the CpipJ1 genome assembly, and so are merged.
MI0010097 cte-mir-79 MI0010052 The previously annotated mir-9 and mir-79 entries map to a single locus in the JGI1.0 genome assembly, and so are merged.
MI0012249 dpu-mir-79 MI0012252 The previously annotated mir-9 and mir-79 entries map to a single locus in the JGI1.0 genome assembly, and so are merged.
MI0003261 fru-mir-142b MI0003223 Two previously annotated mir-142 entries map to a single locus in the FUGU5 genome assembly, and so are merged.
MI0003375 fru-mir-181b-2 MI0003331 Two previously annotated mir-181b entries map to a single locus in the FUGU5 genome assembly, and so are merged.
MI0015965 gga-mir-146c-2 MI0007561 Two previously annotated mir-146c entries map to a single locus in the GalGal4 genome assembly, and so are merged.
MI0003697 gga-mir-147-2 MI0003696 Two previously annotated mir-147 entries map to a single locus in the GalGal4 genome assembly, and so are merged.
MI0007294 gga-mir-1569-1 MI0007295 Two previously annotated mir-1569 entries map to a single locus in the GalGal4 genome assembly, and so are merged.
MI0007337 gga-mir-1609-2 MI0007336 Two previously annotated mir-1609 entries map to a single locus in the GalGal4 genome assembly, and so are merged.
MI0007342 gga-mir-1613-2 MI0007341 Two previously annotated mir-1613 entries map to a single locus in the GalGal4 genome assembly, and so are merged.
MI0007387 gga-mir-1654-2 MI0007386 Two previously annotated mir-1654 entries map to a single locus in the GalGal4 genome assembly, and so are merged.
MI0007465 gga-mir-1727-2 MI0007464 Two previously annotated mir-1727 entries map to a single locus in the GalGal4 genome assembly, and so are merged.
MI0005000 gga-mir-757-2 MI0004999 Two previously annotated mir-757 entries map to a single locus in the GalGal4 genome assembly, and so are merged.
MI0007485 gga-mir-1745-2 MI0007484 Two previously annotated mir-1745 entries map to a single locus in the GalGal4 genome assembly, and so are merged.
MI0015966 gga-mir-222-2 MI0001177 Two previously annotated mir-222 entries map to a single locus in the GalGal4 genome assembly, and so are merged.
MI0007495 gga-mir-1753-2 MI0007494 Two previously annotated mir-1753 entries map to a single locus in the GalGal4 genome assembly, and so are merged.
MI0015392 gga-mir-3538-2 MI0015391 Two previously annotated mir-3538 entries map to a single locus in the GalGal4 genome assembly, and so are merged.
MI0017872 hsa-mir-4482-2 MI0016843 Two previously annotated mir-4482 entries map to one locus in the GRCh37 genome assembly, so are merged.
MI0010841 dre-mir-2190-1 MI0010841 The mature miR-2190 sequence matches a fragment of LSU rRNA, and the pattern of reads derived from the locus is not consistent with microRNA processing (Wei et al. RNA 2012 18:915-929).
MI0019586 dre-mir-2190-2 MI0019586 The mature miR-2190 sequence matches a fragment of LSU rRNA, and the pattern of reads derived from the locus is not consistent with microRNA processing (Wei et al. RNA 2012 18:915-929).
MI0019587 dre-mir-2190-3 MI0019587 The mature miR-2190 sequence matches a fragment of LSU rRNA, and the pattern of reads derived from the locus is not consistent with microRNA processing (Wei et al. RNA 2012 18:915-929).
MI0019588 dre-mir-2190-4 MI0019588 The mature miR-2190 sequence matches a fragment of LSU rRNA, and the pattern of reads derived from the locus is not consistent with microRNA processing (Wei et al. RNA 2012 18:915-929).
MI0020960 mes-MIR160 MI0020960 This sequence is not present in the Cassava4 genome assembly. Patanun et al. (2012) have predicted MIR166 family members based on the updated genome assembly, so this sequence is removed.
MI0020961 mes-MIR166 MI0020961 This sequence is not present in the Cassava4 genome assembly. Patanun et al. (2012) have predicted MIR166 family members based on the updated genome assembly, so this sequence is removed.
MI0018013 mmu-mir-5105 MI0018013 The annotated miR-5105 sequence has been shown to derive from a fragment of LSU rRNA (Castellano and Stebbing, NAR 2013, PMID:23325850) and is removed from the database.
MI0019608 sha-mir-5105 MI0019608 The annotated miR-5105 sequence has been shown to derive from a fragment of LSU rRNA (Castellano and Stebbing, NAR 2013, PMID:23325850) and is removed from the database.
MI0018018 mmu-mir-5109 MI0018018 The annotated miR-5109 sequence has been shown to derive from a fragment of LSU rRNA (Castellano and Stebbing, NAR 2013, PMID:23325850) and is removed from the database.
MI0018005 mmu-mir-5097 MI0018005 The sequence annotated as miR-5097 derives from a fragment of a tRNA, and is neither processed by Dicer nor loaded into Ago2 (Castellano and Stebbing, NAR 2013, PMID:23325850). It is therefore likely a misannotation.
MI0009962 mmu-mir-1965 MI0009962 The sequences annotated as miR-1965, miR-1935, miR-1186 and miR-1196 have been shown to derive from DGCR8-independent processing of a long hairpin formed by a transcribed Alu/B1 SINE element (Castellano and Stebbing, NAR 2013, PMID:23325850). These sequences are therefore likely to be mis-annotations.
MI0009924 mmu-mir-1935 MI0009924 The sequences annotated as miR-1965, miR-1935, miR-1186 and miR-1196 have been shown to derive from DGCR8-independent processing of a long hairpin formed by a transcribed Alu/B1 SINE element (Castellano and Stebbing, NAR 2013, PMID:23325850). These sequences are therefore likely to be mis-annotations.
MI0006284 mmu-mir-1186a MI0006284 The sequences annotated as miR-1965, miR-1935, miR-1186 and miR-1196 have been shown to derive from DGCR8-independent processing of a long hairpin formed by a transcribed Alu/B1 SINE element (Castellano and Stebbing, NAR 2013, PMID:23325850). These sequences are therefore likely to be mis-annotations.
MI0014705 mmu-mir-1186b MI0014705 The sequences annotated as miR-1965, miR-1935, miR-1186 and miR-1196 have been shown to derive from DGCR8-independent processing of a long hairpin formed by a transcribed Alu/B1 SINE element (Castellano and Stebbing, NAR 2013, PMID:23325850). These sequences are therefore likely to be mis-annotations.
MI0006304 mmu-mir-1196 MI0006304 The sequences annotated as miR-1965, miR-1935, miR-1186 and miR-1196 have been shown to derive from DGCR8-independent processing of a long hairpin formed by a transcribed Alu/B1 SINE element (Castellano and Stebbing, NAR 2013, PMID:23325850). These sequences are therefore likely to be mis-annotations.
MI0018024 mmu-mir-5115 MI0018024 The annotated miR-5115 sequence has been shown to derive from a fragment of LSU rRNA (Castellano and Stebbing, NAR 2013, PMID:23325850) and is removed from the database.
MI0018026 mmu-mir-5117 MI0018026 The abundance of reads mapping to the miR-5117 sequence has been shown to be independent of Dicer and DGCR8, and the sequences are not found in Ago2 IP experiments (Castellano and Stebbing, NAR 2013, PMID:23325850). It is therefore likely a misannotation.
MI0014089 mmu-mir-3096a MI0014089 The abundance of reads mapping to the miR-3096 sequence has been shown to be independent of Dicer and DGCR8, and the sequences are not found in Ago2 IP experiments (Castellano and Stebbing, NAR 2013, PMID:23325850). It is therefore likely a misannotation.
MI0016969 mmu-mir-3096b MI0016969 The abundance of reads mapping to the miR-3096 sequence has been shown to be independent of Dicer and DGCR8, and the sequences are not found in Ago2 IP experiments (Castellano and Stebbing, NAR 2013, PMID:23325850). It is therefore likely a misannotation.
MI0007509 gga-mir-1766-2 MI0007508 The previously annotated mir-1766-1 and mir-1766-2 loci map to the same location in the Gallus-gallus-4 assembly, so are merged.
MI0005628 mtr-MIR166h MI0001740 MIR166a and MIR166h map to the same locus in the Mt3.5.2 genome assembly, so the entries are merged.
MI0001742 mtr-MIR169b MI0001741 The mtr-MIR169 entries in miRBase 19 map to only 11 loci in the MT3.5.2 genome assembly. The entries have therefore been rationalised and merged in miRBase 20, and some loci renamed.
MI0005624 mtr-MIR169i MI0005623 The mtr-MIR169 entries in miRBase 19 map to only 11 loci in the MT3.5.2 genome assembly. The entries have therefore been rationalised and merged in miRBase 20, and some loci renamed.
MI0005630 mtr-MIR169m MI0005579 The mtr-MIR169 entries in miRBase 19 map to only 11 loci in the MT3.5.2 genome assembly. The entries have therefore been rationalised and merged in miRBase 20, and some loci renamed.
MI0005631 mtr-MIR169l MI0005578 The mtr-MIR169 entries in miRBase 19 map to only 11 loci in the MT3.5.2 genome assembly. The entries have therefore been rationalised and merged in miRBase 20, and some loci renamed.
MI0005632 mtr-MIR169k MI0005577 The mtr-MIR169 entries in miRBase 19 map to only 11 loci in the MT3.5.2 genome assembly. The entries have therefore been rationalised and merged in miRBase 20, and some loci renamed.
MI0005636 mtr-MIR169n MI0005623 The mtr-MIR169 entries in miRBase 19 map to only 11 loci in the MT3.5.2 genome assembly. The entries have therefore been rationalised and merged in miRBase 20, and some loci renamed.
MI0005637 mtr-MIR169o MI0005623 The mtr-MIR169 entries in miRBase 19 map to only 11 loci in the MT3.5.2 genome assembly. The entries have therefore been rationalised and merged in miRBase 20, and some loci renamed.
MI0019683 mtr-MIR169r MI0005623 The mtr-MIR169 entries in miRBase 19 map to only 11 loci in the MT3.5.2 genome assembly. The entries have therefore been rationalised and merged in miRBase 20, and some loci renamed.
MI0012051 mtr-MIR2088b MI0010545 The two MIR2088 sequences in miRBase 19 map to the same locus in the Mt3.5.2 genome assembly so are merged in miRBase 20.
MI0011871 mtr-MIR2585e MI0011870 The 2 MIR2585 sequences in miRBase 19 map to one locus in the MT3.5.2 genome assembly, so are merged.
MI0011835 mtr-MIR2111g MI0011841 The MIR2111 loci in miRBase 19 overlap in the Mt3.5.2 genome assembly. The entries are rationalised and merged in miRBase 20, leading to several entries being renamed.
MI0011837 mtr-MIR2111i MI0011836 The MIR2111 loci in miRBase 19 overlap in the Mt3.5.2 genome assembly. The entries are rationalised and merged in miRBase 20, leading to several entries being renamed.
MI0011904 mtr-MIR2111b MI0019095 The MIR2111 loci in miRBase 19 overlap in the Mt3.5.2 genome assembly. The entries are rationalised and merged in miRBase 20, leading to several entries being renamed.
MI0011840 mtr-MIR2111l MI0011839 The MIR2111 loci in miRBase 19 overlap in the Mt3.5.2 genome assembly. The entries are rationalised and merged in miRBase 20, leading to several entries being renamed.
MI0011906 mtr-MIR2111d MI0011843 The MIR2111 loci in miRBase 19 overlap in the Mt3.5.2 genome assembly. The entries are rationalised and merged in miRBase 20, leading to several entries being renamed.
MI0011845 mtr-MIR2111q MI0011844 The MIR2111 loci in miRBase 19 overlap in the Mt3.5.2 genome assembly. The entries are rationalised and merged in miRBase 20, leading to several entries being renamed.
MI0011903 mtr-MIR2111a MI0019095 The MIR2111 loci in miRBase 19 overlap in the Mt3.5.2 genome assembly. The entries are rationalised and merged in miRBase 20, leading to several entries being renamed.
MI0011831 mtr-MIR2594b MI0011830 Two MIR2594 sequences map to the same locus in the Mt3.5.2 genome assembly, so are merged in miRBase 20.
MI0011864 mtr-MIR2609c MI0011862 Two MIR2609 loci in miRBase 19 map to one locus in the Mt3.5.2 genome assembly, so are merged in miRBase 20.
MI0011873 mtr-MIR2612b MI0011872 Two MIR2612 loci in miRBase 19 map to one locus in the Mt3.5.2 genome assembly, so are merged in miRBase 20.
MI0011892 mtr-MIR2624b MI0011891 Two MIR2624 loci in miRBase 19 map to one locus in the Mt3.5.2 genome assembly, so are merged in miRBase 20.
MI0011955 mtr-MIR2640b MI0011954 Two MIR2640 loci in miRBase 19 map to one locus in the Mt3.5.2 genome assembly, so are merged in miRBase 20.
MI0011960 mtr-MIR2644b MI0011959 Two MIR2644 loci in miRBase 19 map to one locus in the Mt3.5.2 genome assembly, so are merged in miRBase 20.
MI0012005 mtr-MIR2657b MI0012004 Two MIR2657 loci in miRBase 19 map to one locus in the Mt3.5.2 genome assembly, so are merged in miRBase 20.
MI0012014 mtr-MIR2660b MI0012013 Two MIR2660 loci in miRBase 19 map to one locus in the Mt3.5.2 genome assembly, so are merged in miRBase 20.
MI0005635 mtr-MIR171g MI0005619 Two MIR171 sequences map to the same locus in the Mt3.5.2 genome assembly, so are merged in miRBase 20.
MI0011859 mtr-MIR2606c MI0011858 Two MIR2606 sequences in miRBase 19 map to the same locus in the Mt3.5.2 genome assembly, so are merged in miRBase 20.
MI0012044 mtr-MIR2675b MI0012043 Two MIR2675 sequences in miRBase 19 map to the same locus in the Mt3.5.2 genome assembly, so are merged in miRBase 20.
MI0005633 mtr-MIR395r MI0005079 Some of the MIR395 sequences in miRBase 19 map to the same locus in the Mt3.5.2 genome assembly. The entries are rationalised and merged in miRBase 20.
MI0005078 mtr-MIR395k MI0005073 Some of the MIR395 sequences in miRBase 19 map to the same locus in the Mt3.5.2 genome assembly. The entries are rationalised and merged in miRBase 20.
MI0005598 mtr-MIR395q MI0005071 Some of the MIR395 sequences in miRBase 19 map to the same locus in the Mt3.5.2 genome assembly. The entries are rationalised and merged in miRBase 20.
MI0018483 mtr-MIR5219b MI0018283 Two MIR5219 sequences in miRBase 19 map to the same locus in the Mt3.5.2 genome assembly. The entries are merged in miRBase 20.
MI0018287 mtr-MIR5223b MI0018286 Two MIR5223 sequences in miRBase 19 map to the same locus in the Mt3.5.2 genome assembly. The entries are merged in miRBase 20.
MI0018263 mtr-MIR2592aa MI0018262 Some MIR2592 sequences in miRBase 19 map to the same locus in the Mt3.5.2 genome assembly. The entries are rationalised, merged and renamed in miRBase 20.
MI0018269 mtr-MIR2592ag MI0018268 Some MIR2592 sequences in miRBase 19 map to the same locus in the Mt3.5.2 genome assembly. The entries are rationalised, merged and renamed in miRBase 20.
MI0018273 mtr-MIR2592ak MI0018274 Some MIR2592 sequences in miRBase 19 map to the same locus in the Mt3.5.2 genome assembly. The entries are rationalised, merged and renamed in miRBase 20.
MI0018311 mtr-MIR2592bh MI0018300 Some MIR2592 sequences in miRBase 19 map to the same locus in the Mt3.5.2 genome assembly. The entries are rationalised, merged and renamed in miRBase 20.
MI0019290 hsa-mir-5686 MI0019290 The sequence annotated as mir-5686 is a low complexity repeat. There is no support for microRNA processing from available deep sequencing data.
MI0020982 mse-mir-981-2 MI0021023 Two annotated mir-981 loci map to the same locus in the Msex 1.0 genome assembly, so are merged.
MI0002211 ptc-MIR162c MI0002210 Two MIR162 loci from miRBase 19 map to a single location in the JGI v2 genome assembly, so are merged in miRBase 20.
MI0002389 ptc-MIR479 MI0007032 The MIR171l and MIR479 loci from miRBase 19 map to a single location in the JGI v2 genome assembly, so are merged in miRBase 20.
MI0002395 ptc-MIR481d MI0002396 Five MIR481 sequences in miRBase 19 map to only four loci in the JGI v2 genome assembly. The entries are therefore rationalised in miRBase 20.
MI0002197 ptc-MIR159c MI0002195 Six MIR159 sequences in miRBase 19 map to only five loci in the JGI v2 genome assembly. The entries are therefore rationalised in miRBase 20.
MI0002391 ptc-MIR480b MI0002390 Two MIR480 sequences in miRBase 19 map to only one locus in the JGI v2 genome assembly. The entries are therefore merged in miRBase 20.
MI0002382 ptc-MIR478n MI0002381 Six identical MIR478 sequences in miRBase 19 map to only five loci in the JGI v2 genome assembly. The entries are therefore rationalised in miRBase 20.
MI0022046 ptc-MIR403d MI0005115 Two identical MIR403 sequences in miRBase 19 map to only one locus in the JGI v2 genome assembly. The entries are therefore merged in miRBase 20.
MI0002342 ptc-MIR399e MI0002341 Two identical MIR399 sequences in miRBase 19 map to only one locus in the JGI v2 genome assembly. The entries are therefore merged in miRBase 20.
MI0002340 ptc-MIR399c MI0002339 Two identical MIR399 sequences in miRBase 19 map to only one locus in the JGI v2 genome assembly. The entries are therefore merged in miRBase 20.
MI0002312 ptc-MIR393d MI0002311 Two identical MIR393 sequences in miRBase 19 map to only one locus in the JGI v2 genome assembly. The entries are therefore merged in miRBase 20.
MI0002367 ptc-MIR476c MI0002366 Two identical MIR476 sequences in miRBase 19 map to only one locus in the JGI v2 genome assembly. The entries are therefore merged in miRBase 20.
MI0002286 ptc-MIR171j MI0005114 Two identical MIR171 sequences in miRBase 19 map to only one locus in the JGI v2 genome assembly. The entries are therefore merged in miRBase 20.
MI0023704 mmu-mir-7209 MI0009993 The sequence named mir-7209 in Meunier et al. is a duplicate of mir-1982, so the entries are merged.
MI0003128 hsa-mir-511-2 MI0003127 Two mir-511 sequences in miRBase 19 map to only one locus in the patched GRCh37.p10 genome assembly. The entries are merged in miRBase 20.
MI0012634 peu-MIR2911 MI0012634 The sequence annotated as mature miR2911 is a fragment of rRNA, so is removed from miRBase 20.
MI0021418 nta-MIR2911 MI0021418 The sequence annotated as mature miR2911 is a fragment of rRNA, so is removed from miRBase 20.
MI0022263 han-MIR2911 MI0022263 The sequence annotated as mature miR2911 is a fragment of rRNA, so is removed from miRBase 20.
MI0008269 osa-MIR1423b MI0006963 Two MIR1423 sequences in miRBase 19 map to a single locus in the MSU7 genome assembly. The entries are merged in miRBase 20.
MI0009715 osa-MIR1318 MI0006972 The sequences annotated as MIR1318 and MIR1432 in miRBase 19 map to a single locus in the MSU7 genome assembly. The entries are merged in miRBase 20.
MI0001106 osa-MIR166j MI0001144 Two MIR166 sequences in miRBase 19 map to a single locus in the MSU7 genome assembly. The entries are merged in miRBase 20.
MI0009714 osa-MIR1317 MI0008292 The sequences annotated as MIR1317 and MIR1882e in miRBase 19 map to a single locus in the MSU7 genome assembly. The entries are merged in miRBase 20.
MI0001699 osa-MIR439i MI0001691 Five MIR439 sequences in miRBase 19 map to four loci in the MSU7 genome assembly. The entries are rationalised in miRBase 20.
MI0007051 osa-MIR827c MI0010490 osa-MIR827c (Lu et al. Plant J 2008) was a predicted locus with low sequence similarity to other MIR827 sequences, and which has not been seen in subsequent RNAseq experiments. The sequence is deleted from miRBase 20.
MI0010568 osa-MIR827b MI0010490 Two MIR827 sequences in miRBase 19 map to one locus in the MSU7 genome assembly. The entries are merged in miRBase 20.
MI0001702 osa-MIR396d MI0001703 Two MIR396 sequences in miRBase 19 map to one locus in the MSU7 genome assembly. The entries are merged in miRBase 20.
MI0015779 aly-MIR399j MI0014637 Two MIR399 sequences in miRBase 19 map to one locus in the v1.0 genome assembly. The entries are merged in miRBase 20.
MI0021658 ppe-MIR171d MI0021623 Two MIR171 loci in miRBase 19 map to the same locus in the Prupu1.0 genome assembly. The entries are merged in miRBase 20.
MI0008268 osa-MIR1867 MI0008268 The pattern of deep sequencing reads derived from the MIR1867 locus is not consistent with miRNA processing. The sequence is removed from miRBase 20.
MI0019725 gma-MIR1513d MI0019725 The predicted structure of the region flanking the proposed mature miRNA sequence doesnot adopt a pre-miRNA-like hairpin. The sequence is removed from miRBase 20.
MI0005793 pta-MIR783 MI0005113 The pattern of deep sequencing reads mapping to the MIR783 locus is not consistent with miRNA processing. The entry is removed from miRBase 20.
MI0022101 pde-MIR783 MI0005113 The pattern of deep sequencing reads mapping to the MIR783 locus is not consistent with miRNA processing. The entry is removed from miRBase 20.
MI0005113 ath-MIR783 MI0005113 The pattern of deep sequencing reads mapping to the MIR783 locus is not consistent with miRNA processing. The entry is removed from miRBase 20.
MI0011431 bta-mir-2391 MI0011431 The putative mature sequence is low complexity (AAAAAA seed), and the hairpin prediction is weak. The entry is removed from miRBase 20.
MI0021590 mmu-mir-6243 MI0021590 The sequence annotated as miR-6243 is a fragment of LSU rRNA. The entry is removed from miRBase 20.
MI0016077 hsa-mir-3676 MI0016077 The sequence annotated as miR-3676 is a fragment of a tRNA, and the deep sequencing reads mapping to the predicted hairpin do not support miRNA processing. The entry is removed from miRBase 20.
MI0015918 ssc-mir-4333 MI0015918 The sequence annotated as mir-4333 overlaps the well-conserved snoRNA SNORA53. The entry is removed from miRBase 20.
MI0015930 ssc-mir-4336 MI0015930 The sequence annotated as mir-4336 overlaps the well-conserved snoRNA SNORA18. The entry is removed from miRBase 20.
MI0023528 sbi-MIR169r MI0001558 Two MIR169 sequences map to the same locus in the Sorghum genome assembly. The entries are merged in miRBase 20.
MI0010197 spu-mir-79 MI0010189 The previously annotated mir-9 and mir-79 sequences derive from the same locus. The entries are merged in miRBase 20.
MI0013334 bma-mir-79 MI0013326 The previously annotated mir-9 and mir-79 sequences derive from the same locus. The entries are merged in miRBase 20.
MI0009707 pta-MIR1310 MI0009707 The mature miR1310 exactly matches a fragment of LSU rRNA. The corresponding entry is removed from miRBase 21.
MI0022111 pde-MIR1310 MI0022111 The mature miR1310 exactly matches a fragment of LSU rRNA. The corresponding entry is removed from miRBase 21.
MI0022262 han-MIR1310 MI0022262 The mature miR1310 exactly matches a fragment of LSU rRNA. The corresponding entry is removed from miRBase 21.
MI0022569 cln-MIR1310 MI0022569 The mature miR1310 exactly matches a fragment of LSU rRNA. The corresponding entry is removed from miRBase 21.
MI0005711 cre-MIR916 MI0005711 The region flanking the putative miR916 sequence is predicted to be a tRNA with high confidence by tRNAscan-SE. The sequence is therefore removed in miRBase 21.
MI0023461 bma-mir-5861-2 MI0023460 Two previous mir-5861 annotations collapse to a single locus in the v3 genome assembly.
MI0026295 bma-mir-268-2 MI0026294 Three previous mir-268 annotations collapse to a single locus in the v3 genome assembly.
MI0026296 bma-mir-268-3 MI0026294 Three previous mir-268 annotations collapse to a single locus in the v3 genome assembly.
MI0026302 bma-mir-36-3 MI0026300 Five previous mir-36 annotations collapse to two loci in the v3 genome assembly.
MI0026303 bma-mir-36-4 MI0026300 Five previous mir-36 annotations collapse to two loci in the v3 genome assembly.
MI0026304 bma-mir-36-5 MI0026300 Five previous mir-36 annotations collapse to two loci in the v3 genome assembly.
MI0023436 bma-mir-5840-2 MI0023435 Two previous mir-5840 annotations collapse to one locus in the v3 genome assembly.
MI0023463 bma-mir-5862-2 MI0023462 Two previous mir-5862 annotations collapse to one locus in the v3 genome assembly.
MI0023465 bma-mir-5863-2 MI0023464 Two previous mir-5863 annotations collapse to one locus in the v3 genome assembly.
MI0023445 bma-mir-5847-3 MI0023443 Three previous mir-5847 annotations collapse to two loci in the v3 genome assembly.
MI0023487 bma-mir-5877-2 MI0023486 Two previous mir-5877 annotations collapse to one locus in the v3 genome assembly.
MI0023495 bma-mir-5881c MI0023494 Three previous mir-5881 annotations collapse to two loci in the v3 genome assembly.
MI0023498 bma-mir-5882a-3 MI0023496 Three previous mir-5882a annotations collapse to two loci in the v3 genome assembly.
MI0023501 bma-mir-5882b-3 MI0023499 Three previous mir-5882b annotations collapse to two loci in the v3 genome assembly.
MI0023504 bma-mir-5883-3 MI0023502 Three previous mir-5883 annotations collapse to two loci in the v3 genome assembly.
MI0023475 bma-mir-5872-2 MI0023474 Six previous mir-5872 annotations collapse to one locus in the v3 genome assembly.
MI0023476 bma-mir-5872-3 MI0023474 Six previous mir-5872 annotations collapse to one locus in the v3 genome assembly.
MI0023477 bma-mir-5872-4 MI0023474 Six previous mir-5872 annotations collapse to one locus in the v3 genome assembly.
MI0023478 bma-mir-5872-5 MI0023474 Six previous mir-5872 annotations collapse to one locus in the v3 genome assembly.
MI0023479 bma-mir-5872-6 MI0023474 Six previous mir-5872 annotations collapse to one locus in the v3 genome assembly.
MI0023481 bma-mir-5873-2 MI0023480 Three previous mir-5873 annotations collapse to one locus in the v3 genome assembly.
MI0023482 bma-mir-5873-3 MI0023480 Three previous mir-5873 annotations collapse to one locus in the v3 genome assembly.
MI0011551 bta-mir-2487 MI0011551 The annotated miR-2487 mature sequence is a fragment of LSU rRNA, so is removed from miRBase 21.
MI0015378 gga-mir-3527 MI0015378 The sequence annotated as mir-3527 maps to the chicken mitochondrial DNA sequence. It is removed in miRBase 21.
MI0007291 gga-mir-1566 MI0007291 The submitted mir-1566 sequence does not match to either the assembled chicken genome (galGal4.0), any unmapped contigs, or any chicken sequence in the Trace Archive (2014-04-07). The sequence is removed from miRBase 21.
MI0010156 sko-mir-79 MI0010148 mir-9 and mir-79 map to a single locus in the Skow_1.0 genome assembly, so are merged.
MI0017547 sko-mir-125b MI0010163 mir-125a and mir-125b map to a single locus in the Skow_1.0 genome assembly, so are merged.
MI0004701 mmu-mir-716 MI0004701 miR-716 is a fragment of LSU rRNA. The mouse sequence was never made available in a public release, and is now removed from the database.
MI0019600 sha-mir-716a MI0019600 miR-716 is a fragment of LSU rRNA, so is removed from miRBase 21.
MI0019618 sha-mir-716b MI0019618 miR-716 is a fragment of LSU rRNA, so is removed from miRBase 21.
MI0000334 cel-mir-257 MI0000334 The annotation of cel-mir-257 as a microRNA was questioned by Jan et al (Nature 2011 469:97-101). The pattern of reads from deep sequencing datasets aggregated in miRBase and mapping to the locus is not consistent with microRNA processing. The sequence is removed from miRBase 21.
MI0000335 cel-mir-258-1 MI0000335 The annotation of cel-mir-258 as a microRNA was questioned by Jan et al (Nature 2011 469:97-101). The pattern of reads from deep sequencing datasets aggregated in miRBase and mapping to the locus is not consistent with microRNA processing. The sequence is removed from miRBase 21.
MI0010691 cel-mir-258-2 MI0010691 The annotation of cel-mir-258 as a microRNA was questioned by Jan et al (Nature 2011 469:97-101). The pattern of reads from deep sequencing datasets aggregated in miRBase and mapping to the locus is not consistent with microRNA processing. The sequence is removed from miRBase 21.
MI0000337 cel-mir-260 MI0000337 The annotation of cel-mir-260 as a microRNA was questioned by Jan et al (Nature 2011 469:97-101). The pattern of reads from deep sequencing datasets aggregated in miRBase and mapping to the locus is not consistent with microRNA processing. The sequence is removed from miRBase 21.
MI0000339 cel-mir-262 MI0000339 The annotation of cel-mir-262 as a microRNA was questioned by Jan et al (Nature 2011 469:97-101). The pattern of reads from deep sequencing datasets aggregated in miRBase and mapping to the locus is not consistent with microRNA processing. The sequence is removed from miRBase 21.
MI0000752 cel-mir-353 MI0000752 The annotation of cel-mir-353 as a microRNA was questioned by Jan et al (Nature 2011 469:97-101). The pattern of reads from deep sequencing datasets aggregated in miRBase and mapping to the locus is not consistent with microRNA processing. The sequence is removed from miRBase 21.
MI0001390 cbr-mir-353 MI0001390 The annotation of cel-mir-353 as a microRNA was questioned by Jan et al (Nature 2011 469:97-101). The pattern of reads from deep sequencing datasets aggregated in miRBase and mapping to the locus is not consistent with microRNA processing. The sequence is removed from miRBase 21.
MI0010964 cel-mir-2214 MI0010964 The annotation of cel-mir-2214 as a microRNA was questioned by Jan et al (Nature 2011 469:97-101). The pattern of reads from deep sequencing datasets aggregated in miRBase and mapping to the locus is not consistent with microRNA processing. The sequence is removed from miRBase 21.
MI0011009 cbr-mir-2214 MI0011009 The annotation of cel-mir-2214 as a microRNA was questioned by Jan et al (Nature 2011 469:97-101). The pattern of reads from deep sequencing datasets aggregated in miRBase and mapping to the locus is not consistent with microRNA processing. The sequence is removed from miRBase 21.
MI0022085 bmo-mir-6495 MI0022085 The sequence reported as miR-6495 is a fragment of LSU rRNA. The entry is removed from miRBase 21.
MI0022086 bmo-mir-6496 MI0022086 The sequence reported as miR-6496 is a fragment of LSU rRNA. The entry is removed from miRBase 21.
MI0022067 mja-mir-6490 MI0022067 The sequence reported as miR-6490 appears to derive from a fragment of LSU rRNA. The entry is removed from miRBase 21.
MI0009929 mmu-mir-1940 MI0009929 The sequence reported as miR-1940 appears to be a fragment of the snoRNA SCARNA4. The pattern of reads mapping to the locus is also not consistent with microRNA processing (Kozomara and Griffiths-Jones, NAR 2014 42:D68-D73). The entry is removed from miRBase 21.
MI0030669 chi-mir-1940 MI0009929 The sequence reported as miR-1940 appears to be a fragment of the snoRNA SCARNA4. The pattern of reads mapping to the mouse locus is also not consistent with microRNA processing (Kozomara and Griffiths-Jones, NAR 2014 42:D68-D73). The entry is removed from miRBase 21.
MI0011455 bta-mir-1940 MI0009929 The sequence reported as miR-1940 appears to be a fragment of the snoRNA SCARNA4. The pattern of reads mapping to the mouse locus is also not consistent with microRNA processing (Kozomara and Griffiths-Jones, NAR 2014 42:D68-D73). The entry is removed from miRBase 21.
MI0016070 hsa-mir-3669 MI0016070 The putative hairpin precursor mir-3669 is mostly comprised of an AU simple repeat. The hairpin structure prediction is therefore not useful. Such simple repeats should not be annotated as microRNAs without significant additional experimental evidence. In this case, there are insufficient reads mapping to the locus from aggregated deep sequencing experiments. The entry is therefore removed from miRBase 21.
MI0016074 hsa-mir-3673 MI0016074 The putative hairpin precursor mir-3673 is mostly comprised of an AU simple repeat. The hairpin structure prediction is therefore not useful. Such simple repeats should not be annotated as microRNAs without significant additional experimental evidence. In this case, there are insufficient reads mapping to the locus from aggregated deep sequencing experiments. The entry is therefore removed from miRBase 21.
MI0015976 hsa-mir-1270-2 MI0006407 The two previously annotated mir-1270 sequences map to a single locus in the GRCh38 genome assembly. The entries are merged in miRBase 21.
MI0026414 hsa-mir-7112-2 MI0022963 The two previously annotated mir-7112 sequences map to a single locus in the GRCh38 genome assembly. The entries are merged in miRBase 21.
MI0023562 hsa-mir-6077-2 MI0020354 The two previously annotated mir-6077 sequences map to a single locus in the GRCh38 genome assembly. The entries are merged in miRBase 21.
MI0014243 hsa-mir-3118-5 MI0014131 The six previously annotated mir-3118 sequences map to four loci in the GRCh38 genome assembly. The entries are rationalised in miRBase 21.
MI0015981 hsa-mir-3118-6 MI0014131 The six previously annotated mir-3118 sequences map to four loci in the GRCh38 genome assembly. The entries are rationalised in miRBase 21.
MI0015953 aga-mir-375-2 MI0008310 Two annotated mir-375 map to only one location in the AgamP3 genome assembly. The two sequences are merged in miRBase 21.
MI0015954 ame-mir-10-2 MI0005727 Two previously annotated mir-10 sequences map to a single locus in the AMEL4.5 genome assembly. The entries are merged in miRBase 21.
MI0016458 ata-MIR169 MI0016458 The MIR169 sequence computationally predicted from EST data (Dryanova et al, Genome 2008 51:433-443) does not match the ASM34733v1 genome assembly. The sequence is deleted from miRBase 21.
MI0016462 ata-MIR172 MI0016462 The MIR172 sequence computationally predicted from EST data (Dryanova et al, Genome 2008 51:433-443) does not match the ASM34733v1 genome assembly. The sequence is deleted from miRBase 21.
MI0010114 lgi-mir-79 MI0010105 The sequences annotated as mir-9 and mir-79 map to the same locus in the Helro1 genome assembly. The entries are merged in miRBase 21.
MI0009699 dya-mir-263b-2 MI0009687 Two mir-263b sequences map to a single locus in the caf1 genome assembly. The entries are merged in miRBase 21.
MI0009656 dya-mir-315-2 MI0009685 Two mir-315 sequences map to a single locus in the caf1 genome assembly. The entries are merged in miRBase 21.
MI0009695 dya-mir-316-2 MI0009652 Two mir-316 sequences map to a single locus in the caf1 genome assembly. The entries are merged in miRBase 21.
MI0009686 dya-mir-9a-2 MI0009642 Two mir-9a sequences map to a single locus in the caf1 genome assembly. The entries are merged in miRBase 21.
MI0008449 ptr-mir-1244-10 MI0008447 11 previously annotated mir-1244 sequence map to only 9 loci in the PanTro2.1.4 genome assembly. The entries are rationalised in miRBase 21.
MI0008450 ptr-mir-1244-11 MI0008444 11 previously annotated mir-1244 sequence map to only 9 loci in the PanTro2.1.4 genome assembly. The entries are rationalised in miRBase 21.
MI0008501 ptr-mir-1297-2 MI0008500 Two previously annotated mir-1297 sequences map to only one locus in the PanTro2.1.4 genome assembly. The entries are merged in miRBase 21.
MI0008532 ptr-mir-1324-2 MI0008531 Two previously annotated mir-1324 sequences map to only one locus in the PanTro2.1.4 genome assembly. The entries are merged in miRBase 21.
MI0008542 ptr-mir-141-2 MI0008541 Two previously annotated mir-141 sequences map to only one locus in the PanTro2.1.4 genome assembly. The entries are merged in miRBase 21.
MI0008758 ptr-mir-548i-6 MI0008757 Two previously annotated mir-548i sequences map to only one locus in the PanTro2.1.4 genome assembly. The entries are merged in miRBase 21.
MI0011794 dsi-mir-987-2 MI0011735 Two annotated mir-987 sequences map to a single locus in the CAF1 genome assembly. The entries are merged in miRBase 21.
MI0007973 vvi-MIR828b MI0007973 Rock (Trends Plant Sci. 2013 18:601-610) suggests that the non-coding RNA Vvi-TAS4c has been mis-annotated as MIR828b. The MIR828b locus is therefore removed from miRBase 21.
MI0015997 hsa-mir-3607 MI0015997 The mir-3607 locus overlaps with an annotated snoRNA, SNORD138 (PMID:24174566). On inspection, the pattern of conservation of the locus in vertebrates suggests the snoRNA annotation is more likely. The pattern of deep sequencing reads mapping to the locus in human is also not supportive of the microRNA annotation.
MI0022368 gga-mir-3607 MI0022368 The mir-3607 locus overlaps with an annotated snoRNA, SNORD138 (PMID:24174566). On inspection, the pattern of conservation of the locus in vertebrates suggests the snoRNA annotation is more likely. The pattern of deep sequencing reads mapping to the locus in human is also not supportive of the microRNA annotation.
MI0033068 cgr-mir-3607 MI0033068 The mir-3607 locus overlaps with an annotated snoRNA, SNORD138 (PMID:24174566). On inspection, the pattern of conservation of the locus in vertebrates suggests the snoRNA annotation is more likely. The pattern of deep sequencing reads mapping to the locus in human is also not supportive of the microRNA annotation.
MI0019581 dre-mir-132-3 MI0001991 The sequences previously named mir-132-2 and mir-132-3 map to the same locus in the GRCz10 genome assembly. The entries are therefore merged.
MI0019582 dre-mir-137-3 MI0002001 The sequences previously named mir-137-2 and mir-137-3 map to the same locus in the GRCz10 genome assembly. The entries are therefore merged.
MI0002008 dre-mir-143-2 MI0002007 The sequences previously named mir-143-1 and mir-143-2 map to the same locus in the GRCz10 genome assembly. The entries are therefore merged.
MI0019583 dre-mir-187-2 MI0001370 The sequences previously named mir-187-1 and mir-187-2 map to the same locus in the GRCz10 genome assembly. The entries are therefore merged.
MI0019591 dre-mir-23a-4 MI0001915 The sequences previously named mir-23a-2 and mir-23a-4 map to the same locus in the GRCz10 genome assembly. The entries are therefore merged.
MI0019592 dre-mir-24-5 MI0001919 The sequences previously named mir-24-2 and mir-24-5 map to the same locus in the GRCz10 genome assembly. The entries are therefore merged.
MI0019589 dre-mir-27c-2 MI0001930 The sequences previously named mir-27c-1 and mir-27c-2 map to the same locus in the GRCz10 genome assembly. The entries are therefore merged.
MI0019590 dre-mir-725-2 MI0004769 The sequences previously named mir-725-1 and mir-725-2 map to the same locus in the GRCz10 genome assembly. The entries are therefore merged.
MI0016709 csi-MIR399e MI0016713 Sequences previously named MIR399e and MIR399c map to the same locus in the Csi_valencia_1.0 genome assembly. The entries are merged.
MI0013316 csi-MIR166b MI0013316 The sequences previously named csi-MIR166b and csi-MIR166d do not map to MIR166 hairpin-like sequences in the Csi_valencia_1.0 genome assembly. The entries are deleted.
MI0016695 csi-MIR166d MI0016695 The sequences previously named csi-MIR166b and csi-MIR166d do not map to MIR166 hairpin-like sequences in the Csi_valencia_1.0 genome assembly. The entries are deleted.
MI0016720 csi-MIR477c MI0016718 Sequences previously named MIR477a and MIR477c map to the same locus in the Csi_valencia_1.0 genome assembly. The entries are merged.
MI0016721 csi-MIR479 MI0016698 Sequences previously named MIR171b and MIR479c map to the same locus in the Csi_valencia_1.0 genome assembly. The entries are merged.
MI0016700 csi-MIR172b MI0013302 Sequences previously named MIR172a and MIR172b map to the same locus in the Csi_valencia_1.0 genome assembly. The entries are merged.
MI0006409 hsa-mir-1273a MI0006409 Many of the miRNA loci annotated as mir-1273 family members have patterns of mapped reads from RNAseq experiments that are not consistent with the gene being processed as a miRNA. The reads may be derived from SRP RNA, or derived Alu repeats. hsa-mir-1273a,b,d,e,f,g are removed the database.
MI0008474 ptr-mir-1273 MI0008474 Many of the miRNA loci annotated as mir-1273 family members have patterns of mapped reads from RNAseq experiments that are not consistent with the gene being processed as a miRNA. The reads may be derived from SRP RNA, or derived Alu repeats. hsa-mir-1273a,b,d,e,f,g are removed the database.
MI0014254 hsa-mir-1273d MI0014254 Many of the miRNA loci annotated as mir-1273 family members have patterns of mapped reads from RNAseq experiments that are not consistent with the gene being processed as a miRNA. The reads may be derived from SRP RNA, or derived Alu repeats. hsa-mir-1273a,b,d,e,f,g are removed the database.
MI0015230 ppy-mir-1273a MI0015230 Many of the miRNA loci annotated as mir-1273 family members have patterns of mapped reads from RNAseq experiments that are not consistent with the gene being processed as a miRNA. The reads may be derived from SRP RNA, or derived Alu repeats. hsa-mir-1273a,b,d,e,f,g are removed the database.
MI0016059 hsa-mir-1273e MI0016059 Many of the miRNA loci annotated as mir-1273 family members have patterns of mapped reads from RNAseq experiments that are not consistent with the gene being processed as a miRNA. The reads may be derived from SRP RNA, or derived Alu repeats. hsa-mir-1273a,b,d,e,f,g are removed the database.
MI0018002 hsa-mir-1273f MI0018002 Many of the miRNA loci annotated as mir-1273 family members have patterns of mapped reads from RNAseq experiments that are not consistent with the gene being processed as a miRNA. The reads may be derived from SRP RNA, or derived Alu repeats. hsa-mir-1273a,b,d,e,f,g are removed the database.
MI0018003 hsa-mir-1273g MI0018003 Many of the miRNA loci annotated as mir-1273 family members have patterns of mapped reads from RNAseq experiments that are not consistent with the gene being processed as a miRNA. The reads may be derived from SRP RNA, or derived Alu repeats. hsa-mir-1273a,b,d,e,f,g are removed the database.
MI0020837 ggo-mir-1273c MI0020837 Many of the miRNA loci annotated as mir-1273 family members have patterns of mapped reads from RNAseq experiments that are not consistent with the gene being processed as a miRNA. The reads may be derived from SRP RNA, or derived Alu repeats. hsa-mir-1273a,b,d,e,f,g are removed the database.
MI0020933 ppy-mir-1273e MI0020933 Many of the miRNA loci annotated as mir-1273 family members have patterns of mapped reads from RNAseq experiments that are not consistent with the gene being processed as a miRNA. The reads may be derived from SRP RNA, or derived Alu repeats. hsa-mir-1273a,b,d,e,f,g are removed the database.
MI0016088 hsa-mir-3687-1 MI0016088 The pattern of reads from RNAseq experiments does not support the annotation of mir-3687 as a miRNA. The sequence is removed from the database in release 22.
MI0031515 hsa-mir-3687-2 MI0031515 The pattern of reads from RNAseq experiments does not support the annotation of mir-3687 as a miRNA. The sequence is removed from the database in release 22.
MI0016805 hsa-mir-4459 MI0016805 The pattern of reads from RNAseq experiments does not support the annotation of mir-4459 as a miRNA. The sequence is removed from the database in release 22.
MI0016807 hsa-mir-4461 MI0016807 The pattern of reads from RNAseq experiments does not support the annotation of mir-4461 as a miRNA. The sequence is removed from the database in release 22.
MI0016755 hsa-mir-4419a MI0016755 The pattern of reads from RNAseq experiments does not support the annotation of mir-4419 as a miRNA. The sequence is removed from the database in release 22.
MI0016861 hsa-mir-4419b MI0016861 The pattern of reads from RNAseq experiments does not support the annotation of mir-4419 as a miRNA. The sequence is removed from the database in release 22.
MI0020364 hsa-mir-6087 MI0020364 The pattern of reads from RNAseq experiments does not support the annotation of mir-6087 as a miRNA. The sequence is removed from the database in release 22.
MI0022558 hsa-mir-6723 MI0022558 The pattern of reads from RNAseq experiments does not support the annotation of mir-6723 as a miRNA. The sequence is removed from the database in release 22.
MI0016053 hsa-mir-3653 MI0016053 The pattern of reads from RNAseq experiments, and the base paired secondary structure of the putative pre-miRNA, do not support the annotation of mir-3653 as a miRNA. The sequence is removed from the database in release 22.
MI0016899 hsa-mir-4532 MI0016899 Reads that map to the annotated mir-4532 locus (many with one mismatch) map exactly to annotated 28S rRNA sequences. The miRNA annotation is therefore likely to be false, and the miRNA is therefore removed from the database.
MI0017439 hsa-mir-4792 MI0017439 Reads that map to the annotated mir-4792 locus (many with one mismatch) map exactly to annotated 28S rRNA sequences. The miRNA annotation is therefore likely to be false, and the miRNA is therefore removed from the database.
MI0016753 hsa-mir-4417 MI0016753 The pattern of reads that map to the annotated mir-4414 locus is not consistent with processing as a miRNA. Additionally, the reads may derive from annotated 28S rRNA sequences. The miRNA annotation is therefore likely to be false, and the miRNA is therefore removed from the database.
MI0016056 hsa-mir-3656 MI0016056 The pattern of reads that map to the annotated mir-3656 locus is not consistent with processing as a miRNA. Additionally, the reads may derive from annotated 28S rRNA sequences. The miRNA annotation is therefore likely to be false, and the miRNA is therefore removed from the database.
MI0009954 mmu-mir-1957a MI0009954 The sequences annotated as mir-1957 family members are likely fragments of tRNA sequences. Furthermore, the patterns of reads mapping to these loci from deep sequencing experiments do not support their annotation as miRNAs.
MI0021929 mmu-mir-1957b MI0021929 The sequences annotated as mir-1957 family members are likely fragments of tRNA sequences. Furthermore, the patterns of reads mapping to these loci from deep sequencing experiments do not support their annotation as miRNAs.
MI0023646 mml-mir-133d MI0002533 mir-133a and mir-133d map to the same genomic locus in the Mmul_8.0.1 genome assembly, so the entries are merged.
MI0020902 mml-mir-217b MI0007674 mir-217a and mir-217b map to the same genomic locus in the Mmul_8.0.1 genome assembly, so the entries are merged.
MI0007754 mml-mir-453 MI0023688 mir-323b and mir-453 map to the same genomic locus in the Mmul_8.0.1 genome assembly, so the entries are merged.
MI0018199 mml-mir-371-2 MI0007715 mir-371-1 and mir-371-2 map to the same genomic locus in the Mmul_8.0.1 genome assembly, so the entries are merged.
MI0024975 hsa-mir-7641-1 MI0024975 The sequences annotated as miR-7641 appear to be fragments of 5S rRNA, so are removed from the database.
MI0024976 hsa-mir-7641-2 MI0024976 The sequences annotated as miR-7641 appear to be fragments of 5S rRNA, so are removed from the database.
MI0025423 hhi-mir-7641 MI0025423 The sequences annotated as miR-7641 appear to be fragments of 5S rRNA, so are removed from the database.
MI0032226 cja-mir-9920 MI0032226 mir-9920 maps thousands of times to the C. jacchus genome, and is likely therefore not a bona fide miRNA.
MI0018001 hsa-mir-5095 MI0018001 The mature miR-5095 sequence maps thousands of times to the human genome, and is likely therefore not a bona fide miRNA.
MI0032296 cja-mir-5095 MI0032296 The mature miR-5095 sequence maps thousands of times to the C. jacchus genome, and is likely therefore not a bona fide miRNA.
MI0031902 cja-mir-376a-3 MI0031900 The 3 annotated mir-376a sequences map to only 2 loci in the Callithrix_jacchus-3.2 genome assembly. The entries are marged.
MI0003572 hsa-mir-566 MI0003572 The sequence annotated as miR-566 maps many times to the human genome, and the pattern of reads from deep sequencing datasets does not support the miRNA annotation. The sequence is therefore removed from the database.
MI0008781 ptr-mir-566 MI0008781 The sequence annotated as miR-566 maps many times to primate genomes, and the pattern of reads from deep sequencing datasets in human does not support the miRNA annotation. The sequence is therefore removed from the database.
MI0015057 ppy-mir-566 MI0015057 The sequence annotated as miR-566 maps many times to primate genomes, and the pattern of reads from deep sequencing datasets in human does not support the miRNA annotation. The sequence is therefore removed from the database.
MI0006388 hsa-mir-1254-1 MI0006388 The sequence annotated as miR-1254 maps many times to primate genomes, and the pattern of reads from deep sequencing datasets in human does not support the miRNA annotation. The sequence is therefore removed from the database.
MI0008459 ptr-mir-1254 MI0008459 The sequence annotated as miR-1254 maps many times to primate genomes, and the pattern of reads from deep sequencing datasets in human does not support the miRNA annotation. The sequence is therefore removed from the database.
MI0015212 ppy-mir-1254 MI0015212 The sequence annotated as miR-1254 maps many times to primate genomes, and the pattern of reads from deep sequencing datasets in human does not support the miRNA annotation. The sequence is therefore removed from the database.
MI0016747 hsa-mir-1254-2 MI0016747 The sequence annotated as miR-1254 maps many times to primate genomes, and the pattern of reads from deep sequencing datasets in human does not support the miRNA annotation. The sequence is therefore removed from the database.
MI0002721 ppy-mir-101-3 MI0014811 The 3 annotated mir-101 sequences map to just 2 loci in the P_pygmaeus_2.0.2 genome assembly. The entries are rationalised and merged.
MI0015257 ppy-mir-1302-2 MI0015256 The 5 annotated mir-1302 sequences map to just 4 loci in the P_pygmaeus_2.0.2 genome assembly. The entries are rationalised and merged.
MI0014859 ppy-mir-199a-2 MI0002832 The 2 annotated mir-199a sequences map to just 1 locus in the P_pygmaeus_2.0.2 genome assembly. The entries are rationalised and merged.
MI0015239 ppy-mir-1283b MI0015007 mir-1283b and mir-518a-2 map to the same locus in the P_pygmaeus_2.0.2 genome assembly. The entries are rationalised and merged.
MI0014974 ppy-mir-501 MI0014975 mir-501 and mir-502 map to the same locus in the P_pygmaeus_2.0.2 genome assembly. The entries are rationalised and merged.
MI0014983 ppy-mir-509-2 MI0014982 The 3 annotated mir-509 sequences map to just 1 locus in the P_pygmaeus_2.0.2 genome assembly. The entries are rationalised and merged.
MI0014984 ppy-mir-509-3 MI0014982 The 3 annotated mir-509 sequences map to just 1 locus in the P_pygmaeus_2.0.2 genome assembly. The entries are rationalised and merged.
MI0014987 ppy-mir-511-2 MI0014986 The 2 annotated mir-511 sequences map to just 1 locus in the P_pygmaeus_2.0.2 genome assembly. The entries are rationalised and merged.
MI0014993 ppy-mir-513c MI0014990 mir-513c and mir-513a-1 map to the same locus in the P_pygmaeus_2.0.2 genome assembly. The entries are rationalised and merged.
MI0014995 ppy-mir-514-2 MI0014994 The 3 annotated mir-514 sequences map to just 1 locus in the P_pygmaeus_2.0.2 genome assembly. The entries are rationalised and merged.
MI0014996 ppy-mir-514-3 MI0014994 The 3 annotated mir-514 sequences map to just 1 locus in the P_pygmaeus_2.0.2 genome assembly. The entries are rationalised and merged.
MI0015000 ppy-mir-516a-2 MI0014999 The 3 annotated mir-516a sequences map to just 2 locus in the P_pygmaeus_2.0.2 genome assembly. The entries are rationalised and merged.
MI0015008 ppy-mir-518b MI0015013 Some annotated mir-518/519/526 family sequences collapse to the same loci in the P_pygmaeus_2.0.2 genome assembly. The entries are rationalised and merged.
MI0015007 ppy-mir-518a-2 MI0015006 Some annotated mir-518/519/526 family sequences collapse to the same loci in the P_pygmaeus_2.0.2 genome assembly. The entries are rationalised and merged.
MI0015139 ppy-mir-675b MI0015138 The 2 annotated mir-675 sequences map to just 1 locus in the P_pygmaeus_2.0.2 genome assembly. The entries are rationalised and merged.
MI0015004 ppy-mir-517b MI0015003 Some annotated mir-517 family sequences collapse to the same loci in the P_pygmaeus_2.0.2 genome assembly. The entries are rationalised and merged.
MI0015005 ppy-mir-517c MI0015003 Some annotated mir-517 family sequences collapse to the same loci in the P_pygmaeus_2.0.2 genome assembly. The entries are rationalised and merged.
MI0015015 ppy-mir-519b MI0015013 Some annotated mir-518/519/526 family sequences collapse to the same loci in the P_pygmaeus_2.0.2 genome assembly. The entries are rationalised and merged.
MI0015016 ppy-mir-519c MI0015013 Some annotated mir-518/519/526 family sequences collapse to the same loci in the P_pygmaeus_2.0.2 genome assembly. The entries are rationalised and merged.
MI0015010 ppy-mir-518d MI0015009 Some annotated mir-518/519/526 family sequences collapse to the same loci in the P_pygmaeus_2.0.2 genome assembly. The entries are rationalised and merged.
MI0015033 ppy-mir-526a-1 MI0015011 Some annotated mir-518/519/526 family sequences collapse to the same loci in the P_pygmaeus_2.0.2 genome assembly. The entries are rationalised and merged.
MI0028420 efu-mir-9189e MI0028420 The sequences annotated mir-9189 map thousands of times to the bat genome, and are identified as a family of SINE repeats in PUBMED:18068947.
MI0028568 efu-mir-9189d MI0028568 The sequences annotated mir-9189 map thousands of times to the bat genome, and are identified as a family of SINE repeats in PUBMED:18068947.
MI0028569 efu-mir-9189g MI0028569 The sequences annotated mir-9189 map thousands of times to the bat genome, and are identified as a family of SINE repeats in PUBMED:18068947.
MI0028570 efu-mir-9189c MI0028570 The sequences annotated mir-9189 map thousands of times to the bat genome, and are identified as a family of SINE repeats in PUBMED:18068947.
MI0028571 efu-mir-9189f MI0028571 The sequences annotated mir-9189 map thousands of times to the bat genome, and are identified as a family of SINE repeats in PUBMED:18068947.
MI0028572 efu-mir-9189a MI0028572 The sequences annotated mir-9189 map thousands of times to the bat genome, and are identified as a family of SINE repeats in PUBMED:18068947.
MI0028573 efu-mir-9189b MI0028573 The sequences annotated mir-9189 map thousands of times to the bat genome, and are identified as a family of SINE repeats in PUBMED:18068947.
MI0028574 efu-mir-9189h MI0028574 The sequences annotated mir-9189 map thousands of times to the bat genome, and are identified as a family of SINE repeats in PUBMED:18068947.
MI0029881 ami-mir-9614 MI0029854 ami-mir-9614 is a duplicate of ami-mir-1677c, and so is removed from the database.
MI0022064 hbr-MIR159b MI0022053 MIR159a and MIR159b map to the same locus in the Hevbra1.0 genome assembly. The entries are therefore merged.
MI0029284 dvi-mir-9541 MI0030968 Two duplicate entries are merged in miRBase 22.
MI0018004 hsa-mir-5096 MI0018004 The pattern of smRNAseq reads mapping to the mir-5096 locus is not consistent with miRNA processing. The sequence is also similar to that of several coiled coil protein-coding genes. mir-5096 is therefore removed from miRBase 22.