Stem-loop mmu-mir-129-1

Accession

MI0000222

Symbol

MGI: Mir129-1

Description

Mus musculus mmu-mir-129-1 precursor miRNA

Literature search

52 open access papers mention mmu-mir-129-1
(521 sentences)

Sequence

161182 reads, 229 reads per million, 100 experiments

uggauCUUUUUGCGGUCUGGGCUUGCuguucucucgacaguagucaggAAGCCCUUACCCCAAAAAGUAUcua
((((((((((((.(((..((((((.(((..((((....)).)).))).))))))..))).))))))).)))))

Structure

     -       C   CU      G   uu  -  c 
uggau CUUUUUG GGU  GGGCUU Cug  cu cu g
||||| ||||||| |||  |||||| |||  || ||  
aucUA GAAAAAC CCA  CCCGAA gac  ga ga a
     U       C   UU      g   -u  u  c 

Annotation confidence Medium

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [4].

Genome context

chr6: 29022619-29022691 [+]

Mature mmu-miR-129-5p

• Accession: MIMAT0000209
• Description: Mus musculus mmu-miR-129-5p mature miRNA
• Sequence: 6 - CUUUUUGCGGUCUGGGCUUGC - 26
• Evidence: experimental ; cloned [1,3-4], Illumina [5-6]

Mature mmu-miR-129-1-3p

• Accession: MIMAT0016994
• Description: Mus musculus mmu-miR-129-1-3p mature miRNA
• Sequence: 49 - AAGCCCUUACCCCAAAAAGUAU - 70
• Evidence: experimental ; Illumina [6]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 12554859
   New microRNAs from mouse and human
   "Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T"
   "RNA (2003) 9:175-179


3. PubMed ID: 12007417
   Identification of tissue-specific microRNAs from mouse
   "Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T"
   "Curr Biol (2002) 12:735-739


4. PubMed ID: 15538371
   A pancreatic islet-specific microRNA regulates insulin secretion
   "Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M"
   "Nature (2004) 432:226-230


5. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


6. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009