Stem-loop dme-mir-280

Accession

MI0000365

Description

Drosophila melanogaster dme-mir-280 precursor miRNA

Literature search

3 open access papers mention dme-mir-280
(5 sentences)

Sequence

1 reads, 4 reads per million, 1 experiments

uggcuuuuaUGUAUUUACGUUGCAUAUGAAAUGAUAuuuauaguaaacagauuauuuuauaugcagguauaugcaagucgagguccuccacacug
.((((((..(((((.(((.((((((((((((((((...............))))))))))))))))))).)))))....))))))..........

Structure

---------u      --ua     U   G                Auuuau 
          ggcuuu    UGUAU UAC UUGCAUAUGAAAUGAU      a
          ||||||    ||||| ||| ||||||||||||||||      g
          cuggag    acgua aug gacguauauuuuauua      u
gucacaccuc      cuga     u   -                gacaaa 

Annotation confidence Not enough data

Comments

This sequence is computationally predicted based on conservation in D. pseudoobscura. The precise 5' or 3' ends are unknown. Northern blotting confirmed that the strand containing the predicted miR is predominantly expressed.

Genome context

chr2R: 8298106-8298200 [+]

Mature dme-miR-280-5p

• Accession: MIMAT0000343
• Description: Drosophila melanogaster dme-miR-280-5p mature miRNA
• Sequence: 10 - UGUAUUUACGUUGCAUAUGAAAUGAUA - 36
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 12844358
   Computational identification of Drosophila microRNA genes
   "Lai EC, Tomancak P, Williams RW, Rubin GM"
   "Genome Biol (2003) 4:R42