Stem-loop dme-mir-287

Accession

MI0000381

Description

Drosophila melanogaster dme-mir-287 precursor miRNA

Literature search

1 open access papers mention dme-mir-287
(2 sentences)

Sequence

2 reads, 4 reads per million, 2 experiments

ggacgccggggauguauggguguguagggucugaaauuuugcacacauuuacaauaauuguaaaUGUGUUGAAAAUCGUUUGCACgacuguga
..(((((.(.......).))))).((.(((((((((((((..((((((((((((...))))))))))))..)))...)))).)).)))).)).

Structure

ggacgccggggauguaugggugug  g    -  -    ---   gc            u 
                        ua gguc ug aaau   uuu  acacauuuacaa  
                        || |||| || ||||   |||  |||||||||||| a
                        gu ucag AC UUUG   AAA  UGUGUaaauguu  
-----------------------a  g    C  G    CUA   GU            a 

Annotation confidence Low

Comments

This sequence is computationally predicted based on conservation in D. pseudoobscura. The precise 5' or 3' ends are unknown. Northern blotting confirmed that the strand containing the predicted miR is predominantly expressed.

Genome context

chr2L: 17574610-17574702 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dme-mir-287

Mature dme-miR-287-3p

• Accession: MIMAT0000360
• Description: Drosophila melanogaster dme-miR-287-3p mature miRNA
• Sequence: 65 - UGUGUUGAAAAUCGUUUGCAC - 85
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 12844358
   Computational identification of Drosophila microRNA genes
   "Lai EC, Tomancak P, Williams RW, Rubin GM"
   "Genome Biol (2003) 4:R42