Stem-loop cbr-lin-4

Accession

MI0000492

Description

Caenorhabditis briggsae cbr-lin-4 precursor miRNA lin-4

Gene
family

RF00052; lin-4

Sequence

aucagaugcuuucggccuguUCCCUGAGACCUCAAGUGUGAgcguucugaacaugcuucacgccugggcucuccggguaccaggacggucugag
.((((((.....((.((((..(((.((((.((((.((((((((((.......)))).)))))).)))).)))).)))...)))).)))))))).

Structure

a      gcuuu  g    -uU   U    C    A      -    uc 
 ucagau     cg ccug   CCC GAGA CUCA GUGUGA gcgu  u
 ||||||     || ||||   ||| |||| |||| |||||| ||||  g
 agucug     gc ggac   ggg cucu gggu cgcacu cgua  a
g      -----  a    cau   c    c    c      u    ca 

Annotation confidence Not enough data

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1,2]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrII: 9816746-9816839 [-]

Mature cbr-lin-4

• Accession: MIMAT0000464
• Description: Caenorhabditis briggsae cbr-lin-4 mature miRNA
• Sequence: 21 - UCCCUGAGACCUCAAGUGUGA - 41
• Evidence: not_experimental

References

1. PubMed ID: 11679671
   An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
   "Lau NC, Lim LP, Weinstein EG, Bartel DP"
   "Science (2001) 294:858-862


2. PubMed ID: 11679672
   An extensive class of small RNAs in Caenorhabditis elegans
   "Lee RC, Ambros V"
   "Science (2001) 294:862-864