Stem-loop cbr-mir-80

Accession

MI0000518

Description

Caenorhabditis briggsae cbr-mir-80 precursor miRNA

Literature search

1 open access papers mention cbr-mir-80
(1 sentences)

Sequence

493739 reads, 61715.0 reads per million, 3 experiments

uggacacucuuucgcucAGCUUUCGACAUGAUUCUAAACAauacgcugucgcaauguuguUGAGAUCAUUAGUUGAAAGCCGAacgauucgagauaucca
((((..(((..(((.((.((((((((((((((.((.(((((((.((....))..))))))).)))))))..))))))))).)).)))...)))...))))

Structure

    -ca   -uu   c  A         --     U  A       -c  u 
ugga   cuc   ucg uc GCUUUCGAC  AUGAU CU AACAaua  gc g
||||   |||   ||| || |||||||||  ||||| || |||||||  ||  
accu   gag   agc AG CGAAAGUUG  UACUA GA Uuguugu  cg u
    aua   cuu   a  C         AU     -  G       aa  c 

Annotation confidence High

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1,2]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrIII: 14440871-14440970 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cbr-mir-80

Mature cbr-miR-80-5p

• Accession: MIMAT0053535
• Description: Caenorhabditis briggsae cbr-miR-80-5p mature miRNA
• Sequence: 18 - AGCUUUCGACAUGAUUCUAAACA - 40
• Evidence: not_experimental

Mature cbr-miR-80-3p

• Accession: MIMAT0000487
• Description: Caenorhabditis briggsae cbr-miR-80-3p mature miRNA
• Sequence: 61 - UGAGAUCAUUAGUUGAAAGCCGA - 83
• Evidence: not_experimental

References

1. PubMed ID: 11679671
   An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
   "Lau NC, Lim LP, Weinstein EG, Bartel DP"
   "Science (2001) 294:858-862


2. PubMed ID: 11679672
   An extensive class of small RNAs in Caenorhabditis elegans
   "Lee RC, Ambros V"
   "Science (2001) 294:862-864