Stem-loop rno-mir-331

Accession

MI0000608

Description

Rattus norvegicus rno-mir-331 precursor miRNA

Literature search

56 open access papers mention rno-mir-331
(108 sentences)

Sequence

88260 reads, 91.0 reads per million, 498 experiments

gagucuggucuuguuuggguuuguUCUAGGUAUGGUCCCAGGGAUCccagaucaaaccagGCCCCUGGGCCUAUCCUAGAAccaaccuaaacccau
.....(((....(((((((((.((((((((.((((.(((((((...((...........)).))))))).)))))))))))).)))))))))))).

Structure

gaguc   ucuu         u        U    U       AUC  agau 
     ugg    guuuggguu guUCUAGG AUGG CCCAGGG   cc    c
     |||    ||||||||| |||||||| |||| |||||||   ||    a
     acc    caaauccaa cAAGAUCC UAUC GGGUCCC   Gg    a
----u   ----         c        -    C       --C  acca 

Annotation confidence High

Comments

Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1]. This rat miRNA has a predicted homologue in mouse (MIR:MI0000609).

Genome context

chr7: 34881095-34881190 [-]

Mature rno-miR-331-5p

• Accession: MIMAT0017033
• Description: Rattus norvegicus rno-miR-331-5p mature miRNA
• Sequence: 25 - UCUAGGUAUGGUCCCAGGGAUC - 46
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-331-3p

• Accession: MIMAT0000570
• Description: Rattus norvegicus rno-miR-331-3p mature miRNA
• Sequence: 61 - GCCCCUGGGCCUAUCCUAGAA - 81
• Evidence: experimental ; cloned [1], Northern [1], SOLiD [2]

References

1. PubMed ID: 14691248
   Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
   "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
   "Proc Natl Acad Sci U S A (2004) 101:360-365


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249