Dead hairpin entry

Stem-loop cel-mir-354

Accession

MI0000753

Description

Caenorhabditis elegans cel-mir-354 precursor miRNA mir-354

Gene
family

RF00799; mir-354

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

4 open access papers mention cel-mir-354
(12 sentences)

Sequence

1153 reads, 57.0 reads per million, 67 experiments

cagagccgacuaagcaccuuGGUGCGGCUGCAGACGGGUAUccggcucgacguucauacaucacgacuucuuuccuuuuaccuuguuuguuGCUGCUCCUAUUGGUUUUG
(((((((((...........((.(((((.(((((((((((...((...((.(((..........))).))...))...)))).))))))).))))).))..)))))))))

Structure

         cuaagcaccuu  U     U       -    Ucc  cuc  c   caua 
cagagccga           GG GCGGC GCAGACG GGUA   gg   ga guu    c
|||||||||           || ||||| ||||||| ||||   ||   || |||     
GUUUUGGUU           CC CGUCG uguuugu ccau   cc   cu cag    a
         ---------AU  U     u       u    uuu  uuu  u   cacu