Stem-loop rno-mir-7a-2

Accession

MI0000836

Description

Rattus norvegicus rno-mir-7a-2 precursor miRNA

Gene family

MIPF0000022; mir-7

Literature search

42 open access papers mention rno-mir-7a-2
(249 sentences)

Sequence

47645 reads, 82 reads per million, 459 experiments

ggacagaccagcccugucUGGAAGACUAGUGAUUUUGUUGUugugucuguguccaaCAACAAGUCCCAGUCUGCCACAugguguuggucacauca
.....(((((((.((((.(((.(((((.(.(((((.(((((((.(.......)))))))))))))).))))).))).)))).)))))))......

Structure

-ggaca       c    c   A     A U     U       u uc 
      gaccagc cugu UGG AGACU G GAUUU GUUGUug g  u
      ||||||| |||| ||| ||||| | ||||| ||||||| |  g
      cugguug gguA ACC UCUGA C CUGAA CAACaac c  u
acuaca       u    C   G     C -     -       - ug 

Annotation confidence High

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The ends of the miRNA may be offset with respect to previous annotations.

Genome context

chr1: 140576396-140576490 [+]

Mature rno-miR-7a-5p

• Accession: MIMAT0000606
• Description: Rattus norvegicus rno-miR-7a-5p mature miRNA
• Sequence: 19 - UGGAAGACUAGUGAUUUUGUUGU - 41
• Evidence: experimental ; cloned [1-2], SOLiD [3]

Mature rno-miR-7a-2-3p

• Accession: MIMAT0017091
• Description: Rattus norvegicus rno-miR-7a-2-3p mature miRNA
• Sequence: 57 - CAACAAGUCCCAGUCUGCCACA - 78
• Evidence: experimental ; SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


3. PubMed ID: 15345052
   Microarray analysis of microRNA expression in the developing mammalian brain
   Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
   Genome Biol (2004) 5:R68