Stem-loop rno-mir-9a-3

Accession

MI0000839

Description

Rattus norvegicus rno-mir-9a-3 precursor miRNA

Gene family

MIPF0000014; mir-9

Literature search

78 open access papers mention rno-mir-9a-3
(761 sentences)

Sequence

5579898 reads, 224306 reads per million, 493 experiments

ggaggcccguuucucUCUUUGGUUAUCUAGCUGUAUGAgugccacagagccgucAUAAAGCUAGAUAACCGAAAGUagaaaugacucuaa
((((...(((((((((.(((((((((((((((.(((((..((......))..))))).))))))))))))))))).))))))).))))..

Structure

--    gcc       -  C               G     gu  ca 
  ggag   cguuucu cU UUUGGUUAUCUAGCU UAUGA  gc  c
  ||||   ||||||| || ||||||||||||||| |||||  ||   
  ucuc   guaaaga GA AAGCCAAUAGAUCGA AUAcu  cg  a
aa    --a       U  -               A     gc  ag 

Annotation confidence High

Genome context

chr1: 141229353-141229442 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-9a-3

Mature rno-miR-9a-5p

• Accession: MIMAT0000781
• Description: Rattus norvegicus rno-miR-9a-5p mature miRNA
• Sequence: 16 - UCUUUGGUUAUCUAGCUGUAUGA - 38
• Evidence: experimental ; cloned [1-4], SOLiD [5]

Mature rno-miR-9a-3p

• Accession: MIMAT0004708
• Description: Rattus norvegicus rno-miR-9a-3p mature miRNA
• Sequence: 55 - AUAAAGCUAGAUAACCGAAAGU - 76
• Evidence: experimental ; cloned [3], SOLiD [5]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 14691248
   Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
   "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
   "Proc Natl Acad Sci U S A (2004) 101:360-365


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


4. PubMed ID: 15345052
   Microarray analysis of microRNA expression in the developing mammalian brain
   Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
   Genome Biol (2004) 5:R68


5. PubMed ID: 17805466
   Cloning and identification of novel microRNAs from rat hippocampus
   "He X, Zhang Q, Liu Y, Pan X"
   "Acta Biochim Biophys Sin (Shanghai) (2007) 39:708-714