Stem-loop rno-mir-10b

Accession

MI0000842

Description

Rattus norvegicus rno-mir-10b precursor miRNA

Gene family

MIPF0000033; mir-10

Literature search

28 open access papers mention rno-mir-10b
(146 sentences)

Sequence

73577738 reads, 56538 reads per million, 508 experiments

ccaaaguuguaacguugucuauauauaCCCUGUAGAACCGAAUUUGUGUgguacccacauagucACAGAUUCGAUUCUAGGGGAAuauauggucgaugcaaaaacuuca
...(((((....(((((.((((((((.((((.(((((.(((((((((((((...))))......))))))))).))))))))).)))))))).)))))....)))))..

Structure

cca     guaa     u        a    G     C         ------    u 
   aaguu    cguug cuauauau CCCU UAGAA CGAAUUUGU      GUgg  
   |||||    ||||| |||||||| |||| ||||| |||||||||      |||| a
   uucaa    guagc gguauauA GGGG AUCUU GCUUAGACA      cacc  
-ac     aaac     u        A    -     A         cugaua    c 

Annotation confidence Not enough data

Genome context

chr3: 61647978-61648086 [+]

Mature rno-miR-10b-5p

• Accession: MIMAT0000783
• Description: Rattus norvegicus rno-miR-10b-5p mature miRNA
• Sequence: 28 - CCCUGUAGAACCGAAUUUGUGU - 49
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-10b-3p

• Accession: MIMAT0017092
• Description: Rattus norvegicus rno-miR-10b-3p mature miRNA
• Sequence: 65 - ACAGAUUCGAUUCUAGGGGAA - 85
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249