Stem-loop rno-mir-16

Accession

MI0000844

Description

Rattus norvegicus rno-mir-16 precursor miRNA

Gene family

MIPF0000006; mir-15

Literature search

67 open access papers mention rno-mir-16
(658 sentences)

Sequence

6412829 reads, 5307 reads per million, 508 experiments

cauacuuguuccgcucUAGCAGCACGUAAAUAUUGGCGuagugaaauaaauauuaaacACCAAUAUUAUUGUGCUGCUUuagugugacagggaua
....((((((.((((..(((((((((..((((((((.((.................)).))))))))..)))))))))..)))).))))))....

Structure

caua      c    cU         UA        C  agugaaa 
    cuuguu cgcu  AGCAGCACG  AAUAUUGG Gu       u
    |||||| ||||  |||||||||  |||||||| ||       a
    ggacag guga  UCGUCGUGU  UUAUAACC ca       a
auag      u    uU         UA        A  aauuaua 

Annotation confidence High

Genome context

chr2: 165606072-165606166 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-16

Mature rno-miR-16-5p

• Accession: MIMAT0000785
• Description: Rattus norvegicus rno-miR-16-5p mature miRNA
• Sequence: 17 - UAGCAGCACGUAAAUAUUGGCG - 38
• Evidence: experimental ; cloned [1-4], Northern [1,3], SOLiD [5]

Mature rno-miR-16-3p

• Accession: MIMAT0017094
• Description: Rattus norvegicus rno-miR-16-3p mature miRNA
• Sequence: 59 - ACCAAUAUUAUUGUGCUGCUU - 79
• Evidence: experimental ; SOLiD [5]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 14691248
   Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
   "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
   "Proc Natl Acad Sci U S A (2004) 101:360-365


4. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


5. PubMed ID: 15345052
   Microarray analysis of microRNA expression in the developing mammalian brain
   Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
   Genome Biol (2004) 5:R68